Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2013 ATGGAATTTGATAGTGGTAAACAGCAGCAAAACAGCACATTTGGATGCTTGAAGTTGGTTGCCATAATTGCTCTATGTCTCATTCTAATCTCTCCAGCTGAATCATTTGATCCATTGGATCCAACTGGGAACGTGACAATAAGATGGGATATAATGTCCTGGACATCAGATGGTTATTTGGCCACTGTGACACTGTTTAACTTCCAACTGTACCGCATTATCATGAATCCCGGGTGGACTCTAGGATGGACATGGGCAAAGAAGGAAATAATCTGGGCCATGATGGGGGCTCAAGCCACAGAACAAGGAAACTGTGCCAAGTTCAAGTTGAAGATTCCTCACAGCTGCAAAAGGAACCCTCAAGTGGTTGACTTGCTACCTGGAGCTCCTTTCAACATGCAGTTCACCAACTGCTGCAGGGGGGGTGTGCTAACATCTTGGGGGCAGAACCCTTCAGGTGCAGTCTCAGCATTTCAGATAGGTGTGGGGCTCTCTGGCACCTCTAACAAGACAGTGAAATTGCCTAAGAACTTCAAATTGCTGGGACCAGGACCAGGATACTCATGTGGCCCTGCCAAGATTGTTCCATCCACTGTCGTCCTCACAGATGATCGTAGGCGAAAAATGCAGGCATTGATGTCCTGGAATGTGACATGCACTTATTCACAGTTTCTTGCCTACAAGAACCCAAGCTGTTGTGTTTCTTTATCATCTTTCTACAGTGACAAAGTCACAGGTTGCCCAAGTTGTGCTTGTGGTTGTCAGAATAACGATACCTGTGTCACGAGAGATTCAAAGATCCTGCAAGAGAATGTCACCTCGCCTCACCGAATATCGGACATCCCACCAAAACCATTGCTACAATGCACACACCACCTGTGTCATGTCCGGGTGCACTGGCATGTGAAAGATAATTATAAGGACTATTGGCGTGTGAAGATTGCCATCATCAACTTCAACTATCGGTTGAATTTCACCGATTGGTCTCTTGTTGTGCAGCACCCCAATCTCAGTAATGTCACCCAAGTCTATAGCTTTGAATATATGCCACTTCTTCCCTATGAATCCATAAATGACACAGGCATGTTCTATGGTTTGAAATATTACAATGATCTGTTGATGGAAGCTGGGCCTAAAGGGAATGTGCAGTCTGAGGTGCTCATGAAGAAGGACAAGAACACATTTACTCTCAAGCAGGGATGGGCATTTCCTAGGAGGGTCTACTTCAATGGTGATGAATGTATGCTGCCACCTCCTGATTCATATCCTATGTTGCCAAACTCTGCCCATAAACTACAAACAAGTATTGCATTGATGGCAGCCTATGtggtttttacattattttttcatttggttgTAACACTTTTTGAGGTATAA 1377 0.4401 MEFDSGKQQQNSTFGCLKLVAIIALCLILISPAESFDPLDPTGNVTIRWDIMSWTSDGYLATVTLFNFQLYRIIMNPGWTLGWTWAKKEIIWAMMGAQATEQGNCAKFKLKIPHSCKRNPQVVDLLPGAPFNMQFTNCCRGGVLTSWGQNPSGAVSAFQIGVGLSGTSNKTVKLPKNFKLLGPGPGYSCGPAKIVPSTVVLTDDRRRKMQALMSWNVTCTYSQFLAYKNPSCCVSLSSFYSDKVTGCPSCACGCQNNDTCVTRDSKILQENVTSPHRISDIPPKPLLQCTHHLCHVRVHWHVKDNYKDYWRVKIAIINFNYRLNFTDWSLVVQHPNLSNVTQVYSFEYMPLLPYESINDTGMFYGLKYYNDLLMEAGPKGNVQSEVLMKKDKNTFTLKQGWAFPRRVYFNGDECMLPPPDSYPMLPNSAHKLQTSIALMAAYVVFTLFFHLVVTLFEV 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2013 458 PANTHER COBRA-LIKE PROTEIN 1 456 - -
Ssu1g2013 458 Pfam COBRA-like protein 59 222 IPR006918 GO:0010215|GO:0031225
Ssu1g2013 458 PIRSF COBRA 8 455 IPR006918 GO:0010215|GO:0031225
Ssu1g2013 458 PANTHER PROTEIN COBRA 1 456 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2013 Ssu-Chr1 57134679 57136808 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2013 11 450 COBRA Gene Family AT3G02210 57.562 0.0 572
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2013 - - gmx:100813134 881.708
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2013 1 57134679 57136808 Ssu1g2013 1 57134679 57136808 ECH