Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2012 ATGGAATTTGATAGTGGTAAACAACAGCAAAACGGCACATTTGGATACTTGAAGTTGATTGCCTTAATTGCTCTATGTCTCGTTCTAATTTCTCCAGCAGAATCATTTGATCCATTAGATCCAACCGGGAACGTGACAATAAGATGGGATATCATGTCCTGGACATCAGATGGTTATTTGGCCAGTGTGACATTGTTTAACTTTCAACTGTACCGCAATATTATGAATCCCGGGTGGACTCTAGGATGGACATGGGCAAAGAAGGAAATAATTTGGGCCATGATGGGGGCTCAAGCCACAGAACAAGGAAACTGTGCCAAGTTCAAGTTGAAGATTCCTCATAGCTGCAAAAGGAACCCTCAAGTGGTTGACTTGCTACCTGGAGCTCCTTTCAACATGCAGTTCACTAACTGCTGCAGGGGGAACCCTTCAGGTGCAGTCTCAGCATTTCAGATAGGTGTGGGGCTCTCTGGCACCTCTAACAAGACAGTGAAATTGCCTAAGAACTTCAAATTGCAGGGACCAGGACCAGGATATTCGTGTGGCCCTGCCAAGATTGTTCCATCCACTGTCATCCTCACAGATGATCGCAGGCGAAAAATGCAGGCATTGATGTCCTGGAATGTGACATGCACTTATTCACAGTTTCTTGCCTACAAGAACCCAAGCTGTTGTGTTTCTTTATCATCTTTCTACAGTGACAAACTCACAGGATGCCCAAGTTGTGCTTGCGGTTGTCAAAATAACGATACCTGTGTCACGAGAGATTCAAAGATCCTGCAAGAGAATGTCACCTCGCCTCACCGAAAATCGGACATCATACCAAAACCATTGTTACAATGCACACACCACCTGTGTCATGTCCGGGTGCACTGGCATGTGAAAGACAACTACAAGGACTATTGGCGTGTGAAGATTGCCATCATCAACTTCAACTATCGGTTGAATTTCACCGATTGGTCTCTTGTTGTGCAGCATCCCAATCTCAATAATGTCACCCAAGTCTATAGCTTTGAATATATGCCACTTCTTCCCTATGAATCCATAAATGACACAGGCATGTTCTATGGTTTGAAATATTACAATGATCTGTTGATGGAAGCTGGGCCTAAAGGGAATGTGCAGTCTGAGGTGCTTATGAAGAAGGACAAGAACACATTTACTCTCAAGCAGGGATGGGCATTTCCTAGGAGGGTCTACTTCAATGGTGATGAATGTATGCTGCCACCTCCTGATTCATATCCTATGTTGCCAAACTCTGCCCATAAACTACCAATAAGTATTATGTTGATGGCAGGCTATGTggttttccctttattttttcatttggttgTAACACTTTTTTGA 1347 0.4298 MEFDSGKQQQNGTFGYLKLIALIALCLVLISPAESFDPLDPTGNVTIRWDIMSWTSDGYLASVTLFNFQLYRNIMNPGWTLGWTWAKKEIIWAMMGAQATEQGNCAKFKLKIPHSCKRNPQVVDLLPGAPFNMQFTNCCRGNPSGAVSAFQIGVGLSGTSNKTVKLPKNFKLQGPGPGYSCGPAKIVPSTVILTDDRRRKMQALMSWNVTCTYSQFLAYKNPSCCVSLSSFYSDKLTGCPSCACGCQNNDTCVTRDSKILQENVTSPHRKSDIIPKPLLQCTHHLCHVRVHWHVKDNYKDYWRVKIAIINFNYRLNFTDWSLVVQHPNLNNVTQVYSFEYMPLLPYESINDTGMFYGLKYYNDLLMEAGPKGNVQSEVLMKKDKNTFTLKQGWAFPRRVYFNGDECMLPPPDSYPMLPNSAHKLPISIMLMAGYVVFPLFFHLVVTLF 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2012 448 PANTHER PROTEIN COBRA 1 448 IPR006918 GO:0010215|GO:0031225
Ssu1g2012 448 PIRSF COBRA 11 447 IPR006918 GO:0010215|GO:0031225
Ssu1g2012 448 Pfam COBRA-like protein 59 214 IPR006918 GO:0010215|GO:0031225
Ssu1g2012 448 PANTHER COBRA-LIKE PROTEIN 1 448 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2012 Ssu-Chr1 57099778 57101910 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2012 30 442 COBRA Gene Family AT3G02210 57.547 0.0 552
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2012 - - gmx:100813134 883.248