Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2010 ATGGAGTCTTGGGGCTATGTTGCTGAGGAGAAAGGGTATGTCTCCAATGAGGCACTCCCACCTCCCAACACACTTGGGAGAAGCAAAGGTTCCTTCTTGGGTTGGGAACTGAAAACCCCATGTAGTTTTTCCAATGACATGTTGGCTTTGGGTCAGCAAAACGTTGAGGATCAAGGTTTTGAAGAGTTGGGTTTTCAAGGAATGTTGGGGAAACAATTGTGTGGTGACCCTATTGGTACTGTTCAGAGCAGAAAGGTGGATGATGTTGTTGACTGCAGAATCACTAGTCCTAGTCCTGTTGGGGCTGCCCCAAATGCATTTTCTGCAAGGGAGGACTTCAATTCCAAGCTTTCAAACTCTCTGGGGGACTCTAGTGGTGGCAATTCACTCATTGATTTGAAGCTGGGTAGATTTGCTGACCATGGAGATGCCATGGTTCCAACATTTTCTAAGGGAGCCCCCATCTTGTCTGAGTCTGAGTCTTCGACGCCACCGAAGAGGGTGAGAGCTTCGGGAGTCCATTCTCAGACTGCTTACTGCCAAGTCTATGGCTGTAACAAGGATCTGAGTGGTTGCAAAGACTACCACAAGAGGCACAAAGTTTGTGAGGTTCACTCCAAGACTTCCAAAGTTATAGTGAACGGCATTGAACAAAGGTTTTGTCAGCAATGTAGTAGGTTTCATTTGCTGGCTGAATTTGATGATGGTAAGCGTAGCTGTCGTAAACGCCTTGCAGGCCATAATGAGCGTCGAAGAAAGCCACAAATGGGTATTCACTCTGGAAAAGCTGGGAGGTTGCTTCAGCCATACGGTGGAGACCATGCTAACATCATCTTTTATCTGCCAAGAGATACTCCCAGTGGGGTCTTGTCTTCTGAGAAATATGGAACAAGTGACTGGTGGAGACCTATAAAAGCTGAAGACAGCACTGGTTTTACTTTTAGGCCCCTTTCTTCTATTCCTATTGCCAATGGACATCCTCAGTCAAGATCTCTATTTCCTTCATATAGCAAAAAACAACTTCCATTTCTTCACGAAAATGGCACTACATCTGCTACAGGAAACATCTTCTCTGAAAACAATAACCAATATCATTCACCCTCCCTTGGTGGCCAAAATTCTGGGTCACAGTCACTATTCCAGAACACCTCCTTAGGAAGTGAGgacttcaatatttttaatacagaATCAGCAGTTCAAGGATTATCAGGAATTTCTGACTCTGGCTGTGCTCTCTCTCTTCTGTCATCTCAATCCCAGAACTCTTCAAGCCAATCGTCAGGAATTCCCATGGCTCGCCCAATGGTTATTCCAAGCAGCCATACCCATTACAGCATGAGTCAGGTTTCTGAAAAGTTGATTGGAATAAGTTCACAGGCTTCAAGTGGAGTGTCAGATAGGTTTCCATCTGCATTCAATCCTGCAGATGGAAGTCACCTTAGTCCCATATTGATATCAGACAATAATGAAATTGTCAATTTTGAAATGGCAGATGGGATCTTCCAAGGGTCGGATTTTGTGAACCTGAAAGATCGTCTCTCCTGTGAAGATGGCCTCACCATTGACTTGCTTCAACTATCATCACAACTTCAGCGCGTCGAGCATCAGAGGCAGGCCTTGCAGATAAGTATGGGTAACAAAATTGATAAACGGGGTCGTTGTAGTATAGTGGTGAGTATTCCCGCCTGTCACGCGGGTGACCCGGGTTCGATCCCCGGCAACGgcgtttag 1731 0.45 MESWGYVAEEKGYVSNEALPPPNTLGRSKGSFLGWELKTPCSFSNDMLALGQQNVEDQGFEELGFQGMLGKQLCGDPIGTVQSRKVDDVVDCRITSPSPVGAAPNAFSAREDFNSKLSNSLGDSSGGNSLIDLKLGRFADHGDAMVPTFSKGAPILSESESSTPPKRVRASGVHSQTAYCQVYGCNKDLSGCKDYHKRHKVCEVHSKTSKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQMGIHSGKAGRLLQPYGGDHANIIFYLPRDTPSGVLSSEKYGTSDWWRPIKAEDSTGFTFRPLSSIPIANGHPQSRSLFPSYSKKQLPFLHENGTTSATGNIFSENNNQYHSPSLGGQNSGSQSLFQNTSLGSEDFNIFNTESAVQGLSGISDSGCALSLLSSQSQNSSSQSSGIPMARPMVIPSSHTHYSMSQVSEKLIGISSQASSGVSDRFPSAFNPADGSHLSPILISDNNEIVNFEMADGIFQGSDFVNLKDRLSCEDGLTIDLLQLSSQLQRVEHQRQALQISMGNKIDKRGRCSIVVSIPACHAGDPGSIPGNGV 576
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2010 576 Pfam SBP domain 180 253 IPR004333 GO:0003677
Ssu1g2010 576 SUPERFAMILY SBT domain 178 257 IPR036893 GO:0003677|GO:0005634
Ssu1g2010 576 Gene3D - 170 241 IPR036893 GO:0003677|GO:0005634
Ssu1g2010 576 PANTHER 1 PROTEIN, PUTATIVE-RELATED 43 546 - -
Ssu1g2010 576 MobiDBLite consensus disorder prediction 358 381 - -
Ssu1g2010 576 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 43 546 IPR044817 GO:0003677
Ssu1g2010 576 ProSiteProfiles Zinc finger SBP-type profile. 177 254 IPR004333 GO:0003677
Ssu1g2010 576 Coils Coil 523 543 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2010 Ssu-Chr1 57040396 57045181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2010 131 268 SBP-box Gene Family AT1G69170 62.319 3.62e-50 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Ssu1g2010 SBP 6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2010 - - gmx:100777766 908.672
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2010 1 57040396 57045181 Ssu6g1173 6 19169886 19173207 ECH
Ssu1g2010 1 57040396 57045181 Ssu1g2010 1 57040396 57045181 ECH