Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g2008 ATGGAAAGAATTCTTGAAAGGTATGAGAGGTATTCATATGCGGAGAGACAGCTTGTTGCAAATGATCAGCCACAAAGTGAAAATTGGACTCTAGAACATGCAAAGCTCAAAGCAAGGTTAGAAGTCCTACAGAAAAATCAAAGGAATTTTATGGGAGAAGATTTGGATGGCCTAACCATCAAAGAGCTGCAGAATTTGGAGCATCAACTTGATAGTGCTCTTAAACACATTAGATCACGGAAGAATCAACTCATGTATGAATCTATTTCAGAGCTTCATAAAAAGGATAAGGCCCTACAGGAACAAAACAACACTCTCGCTAAGAAGataaaggagaaagagaaggcACTAGCCCAACGGGCACAACTGGAGCAACATGGTGATGGAATGGATGTAACTTCCTCTGTCCTTGTACCTCAACCATTGGAGGCGTCAAATATTAGAAGTTCTTCCCAAGTCAGAGGTGATGGAGGAGATAATGAAGGAACCCCAACTCCAACCCGAGCTAATGCCATTCTTCCACCTTGGATGCTTCGTCCTACAAATGAATAG 552 0.404 MERILERYERYSYAERQLVANDQPQSENWTLEHAKLKARLEVLQKNQRNFMGEDLDGLTIKELQNLEHQLDSALKHIRSRKNQLMYESISELHKKDKALQEQNNTLAKKIKEKEKALAQRAQLEQHGDGMDVTSSVLVPQPLEASNIRSSSQVRGDGGDNEGTPTPTRANAILPPWMLRPTNE 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g2008 183 Coils Coil 63 83 - -
Ssu1g2008 183 Pfam K-box region 21 110 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu1g2008 183 ProSiteProfiles K-box domain profile. 26 116 IPR002487 GO:0003700|GO:0005634|GO:0006355
Ssu1g2008 183 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL8 HOMOLOG 2 163 - -
Ssu1g2008 183 Coils Coil 26 46 - -
Ssu1g2008 183 Coils Coil 96 126 - -
Ssu1g2008 183 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 163 - -
Ssu1g2008 183 MobiDBLite consensus disorder prediction 144 167 - -
Ssu1g2008 183 MobiDBLite consensus disorder prediction 144 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g2008 Ssu-Chr1 56837780 56847445 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g2008 1 181 MADS-box Gene Family AT5G60910 61.538 2.42e-72 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g2008 K09264 - gmx:100816836 313.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g2008 1 56837780 56847445 Ssu6g1172 6 19109122 19117286 ECH
Ssu3g0321 3 5907535 5914151 Ssu1g2008 1 56837780 56847445 ECH
Ssu8g2183 8 57567296 57572641 Ssu1g2008 1 56837780 56847445 ECH
Ssu1g2008 1 56837780 56847445 Ssu1g2008 1 56837780 56847445 ECH