Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1993 ATGGAGCGCAATGGGGCTAACAGACACCGTGGACCACCAAATTATGCTACCTTAACACAGCATTGTAGCTCTCTTTCTCTTACCCGGAATTCCACTCTGAACAATGAAACAATTGAAGCTCCCCACGAGGAGAGACTCCGTGACCGTGTTTTGACCCATCTCGATTCATCTCAAGTGTTACACTGTATTCCATTTTACCACTCCAAATTGCGCCTTTCCAACAATAGCAAGAGTCCAAACACGTCATtaaacagcaacaacaacaatgctGACGAAGCAAAGGCTCTCCTCGAAGACCgaaagaagaagaggatgtTCTCAAACAGAGAATCAGCTCGCAGGTCCCGAATGCGGAAAAAGCAACAAATTGAGTCCCTTCAGTGTCACGTGGATCATCTTCGGATACTGAGTCGTCAACTCTcccaaaaaatcatttacttgcTGGAATGCAACCAGCAAATCCTCCAACACAATGCACAACTTAAAGACAAGGTTTCTTCTCTTCAAGTTGCGCTCTCTGAGTTGTTAGGTTCTCTGGGTCATGTTGACCAGCATCACCACTTCCCCACTGGCCTCGTACCCGAGCCTTCTTCAGCTTCGGCGTTCCACCAATCGCTAGCTAGTTCCGGAGCATAG 636 0.4355 MERNGANRHRGPPNYATLTQHCSSLSLTRNSTLNNETIEAPHEERLRDRVLTHLDSSQVLHCIPFYHSKLRLSNNSKSPNTSLNSNNNNADEAKALLEDRKKKRMFSNRESARRSRMRKKQQIESLQCHVDHLRILSRQLSQKIIYLLECNQQILQHNAQLKDKVSSLQVALSELLGSLGHVDQHHHFPTGLVPEPSSASAFHQSLASSGA 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1993 211 Coils Coil 80 103 - -
Ssu1g1993 211 Gene3D - 99 179 - -
Ssu1g1993 211 SMART brlzneu 96 160 IPR004827 GO:0003700|GO:0006355
Ssu1g1993 211 Pfam bZIP transcription factor 98 158 IPR004827 GO:0003700|GO:0006355
Ssu1g1993 211 PANTHER BASIC LEUCINE ZIPPER 43-RELATED 1 198 IPR044521 -
Ssu1g1993 211 MobiDBLite consensus disorder prediction 71 90 - -
Ssu1g1993 211 PANTHER BASIC LEUCINE-ZIPPER 70-RELATED 1 198 - -
Ssu1g1993 211 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 98 147 IPR004827 GO:0003700|GO:0006355
Ssu1g1993 211 SUPERFAMILY Leucine zipper domain 100 151 IPR046347 GO:0003700|GO:0006355
Ssu1g1993 211 CDD bZIP_plant_GBF1 101 149 IPR045314 GO:0003700|GO:0006355
Ssu1g1993 211 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 103 118 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1993 Ssu-Chr1 56408687 56409322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1993 98 176 bZIP Transcription Factor Family AT5G60830 59.494 2.01e-24 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Ssu1g1993 bZIP_1 5.4e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1993 - - pvu:PHAVU_009G204300g 244.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1993 1 56408687 56409322 Ssu6g1154 6 18803577 18804200 PCT