Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1988 ATGAACAATCCTGCAGATGAAAGGGAGCAGTGTCAAAAGAAGAGGAAATCTATCACATGTGAAGCCTCTACCTTGAGGACATCAAGGAGAAGATTCTGcaacaataaaaatgaagaagagatgAACAAGGGAGTTTCAACAACATTGAAGCTTTACGATGACCCATGGAAGATCAAGAAGAAGCTAACTGATAGTGATTTGGGAATCTTAAGTAGACTCTTGTTGGCTGCAGATTTGGTCAAGAAACAAATTTTGCCTTTGTTGGGTGCAGATCATGCAAGAGCCGCAGAAACTGAAGAAGGGACCCCGGTTAGAATTTGGGACATGGACACCAAAACCATGCACCAACTCGTTCTAAAGCGATGGTCTTCATCCAAGAGCTATGTTCTTATTGGAAAGTGGAACCAAGATTTCGTGAGAAGAAGAGATCTAAAGAAAGGTGATGAGATCGGATTTCACTGGGATCCATATAATTGCGTTTTCAATTTCTGTGTTCTTAAACGAACTATGCCAGAGAATTAA 522 0.3927 MNNPADEREQCQKKRKSITCEASTLRTSRRRFCNNKNEEEMNKGVSTTLKLYDDPWKIKKKLTDSDLGILSRLLLAADLVKKQILPLLGADHARAAETEEGTPVRIWDMDTKTMHQLVLKRWSSSKSYVLIGKWNQDFVRRRDLKKGDEIGFHWDPYNCVFNFCVLKRTMPEN 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1988 173 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 6 168 - -
Ssu1g1988 173 SUPERFAMILY DNA-binding pseudobarrel domain 54 169 IPR015300 -
Ssu1g1988 173 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 6 168 - -
Ssu1g1988 173 Gene3D - 55 170 IPR015300 -
Ssu1g1988 173 CDD B3_DNA 56 167 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1988 Ssu-Chr1 55993172 55993693 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1988 58 153 RAV Transcription Factor Family AT1G50680 33.010 7.86e-08 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1988 - - pvu:PHAVU_009G204600g 332.028