Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Ssu1g1977 | ATGGGGAAAGAGGCTGTTGAGGATTGGAGGAGGAAAAAGCAGGATATAGACATGAATAACAGAAATGTTAAAGTGCATCATGGAGAAGGTGTTTTTGACTATTCTAAATGGAAGGATTTGAAAGTTGGAGACATAGTAAAGGTTGAAAAGGATGAGTTTTTCCCTGCTGATCTCATCTTACTTTCATCAAGCTATGATGATGCAATTTGCTATGTTGAGACCATGAATCTTGATGGAGAAACAAATCTAAAAGTTAAACAAGCACTGGAAGAAACTTCAAAGTTGCAAGAAGACTcaagctttcaaaatttcaaggcTATCATCAAATGTGAAGATCCAAATGCAAATTTGTACTCATTTGTAGGGAGTTTGGAGCTTGAAGATCAACAGCATCCTCTTGCACCTCAGCAGCTACTTCTTAGGGACTCAAAGCTAAGGAACACAGATTTTATCTATGGTGTGGTAATCTTTACAGGCCATGATACAAAGGTTATGCAGAACTCAACAGAACCTCCATCCAAGAGAAGCACAGTTGAGAAACGGATGGATAAGATCATCTACTTTCTGttctttgtcttattttttatttcttttattggttCAATTTTCTTCGGGATTGCAACCAGGGAGGACCTTCAAAATGGAGTTATGAAGCGATGGTACCTCAGACCAGATGATACCACAATTTATTATGATCCAAAGAGAGCAGCAGTTGCAGCAATGCTGCATTTCTTGACTGCACTTATGTTGTATAGTTATTTGATTCCAATTTCTTTGTATGTTTCCATTGAAATTGTGAAAGTTCTTCAAAGCACGTTCATCAACCAGGATTTGCACATGTATCATGAAGAAACTGACCGGCCAGCACATGCCCGTACCTCAAATTTGAATGAAGAACTTGGCCAAGTTGATACTATACTTTCAGATAAAACAGGAACTTTGACTTGCAACTCTATGGAATTCATCAAGTGTTCTATTGCTGGGATTGCGTATGGCCAAGGAGTTACAGAAGTTGAGAGAGCTCTAGCCAGGAGAAAAGGAGTCCCTTTAAGTCAAGAGTTGACAGAAGATGACAATGTTCCAGAGACTTCTGAAGCAAAGTCTTCCATTAAAGGTTTTAACTTTATGGATGAAAGGATCATGAATGGAAATTGGATCAACGAACCTCACGCCAATGTAGTCCAGAACTTCCTGCGATTGTTGGCAGTATGCCATACGGCAATACCTGAAATTGATGAAGAATCTGGTAAAGTTTCATACGAAGCCGAGTCACCTGATGAGGCAGCTTTTGTGGTTGCAGCCAGGGAACTTGGATTTGAGTTTTATGAAAGGACACAGACAACTATTTCAGTGCGTGAGTTCAATCCCAAATCAGGCAAGACAACTGAAAGGTCgtacaaacttttaaatatattagagttTAGTAGTGCAAGAAAGCGGATGTCTGTAATTGTAAGAGATGAGGAGGGGAAACTGATACTATTTAGCAAAGGAGCCGACAGTGTCATGTTTGAACGACTTGCAAGGAATGGAAGGGAGTTTGAAGAGAAGACTAAGCAGCACATAGATGAATATGCTGATGCTGGTTTGAGGACCTTGATACTTGCATATCGTGAACTTGATGAAGAAGAGTACAATCTATTCAATGAAGAATTCATGGAGGCCAAGAACTTAGTGAGTGCAGATCGGGAGCAAATTGTGGAGGAAATATCAGAAAAGATTGAGAAGGATTTAATTCTTCTTGGTGCTACTGCAGTTGAAGACAAACTTCAAAATGGGGTTCCTGAATGCATTGACAAGCTAGCACAGGCAGGAATTAAGCTATGGGTTCTGACTGGTGATAAAATGGAGACAGCAATCAATATTGGGTTTGCTTGTAGTTTACTCAGACAAGGAATGaagcaaattataattagttcaGACACTCCAGAAACCAAATCACTGGAGAAAGTGGAGGACAAGTCTGTGGCTGAAGCGGCAATTAAGGAGAGTGTTATTCATCAattaaggaaaggaaaggaattACTTGCTGAATCTGATGAAAACTCTGAGGCATTAGCTCTAATCATTGATGGGAAGTCTCTCACTTATGCACTAGAAGATGATGTAAAGGACTTGTTTCTTGAACTTGCCGTTGGCTGTGCATCTGTTATATGCTGTCGTTCATCTCCCAAGCAGAAAGCACTTGTTACTAGACTAGTAAAGATTAAAACTGGTAGTATAACTCTGGCAATTGGTGATGGGGCAAATGATGTTGGAATGCTTCAAGAAGCAGACATTGGGATTGGTATCAGTGGTGTTGAAGGAATGCAGGCAGTTATGTCAAGTGATATTGCAATTGCCCAATTTCGGTTTCTAGAGCGTTTACTTCTTGTGCATGGGCATTGGTGTTACAGAAGAATCTCATCAATGATCTGCTACTTCTTTTACAAGAACATTGCCTTTGGCTTCACCCTCTTCTTCTACGAGATCTATGCCTCATTCTCGGGGCAAGCTGCATACAATGATTGGTTCCTCTCACTATATAACGTATTCTTCACTTCCCTTCCTGTAATTGCCTTGGGAGTGTTTGACCAGGATGTCTCTGCTAGACTATGTCTCAAGTTCCCATTATTATATCAAGAAGGTGTACAAAATACCCTATTCAGCTGGAAACGGATCCTTGGTTGGGCATTCAATGGAGTGTTGAGTGCTACCATAATATTCTTCTTCTGCATCAATGCGATGGAGGATCAAGCATTCCGTAAAGGAGGGGAAGTTGCTGATCTGGAAGTTCTTGGTGCCACCATGTACACTTGTGTTGTGTGGGTGGTGAATTGCCAAATGGCATTATCAATCAGTTACTTCACttacatacaacatatattcataTGGGGTGGCAttcttttttggtatatattCCTCTTAGTGTATGGAACCTTGGACCCCTCTCTATCAACCACTGCCTATAAGGTCTTAATTGAAGCTTGTGCTCCAGCACCATCTTACTGGCTCATCACTTTGCTTGTGCTTGTTGCTTCACTCCTTCCATACTTTGCCTATGCTTCAATCCAAATGCGATTCTTCCCCATGTTCAATCAAATGATACAATGGATGCGAAATGATGGGCAAACGACTGACCCAGAATACGTTAATGTTGTGAGACAGAGATCAATAAGACACACTACAGTTGGGTTCACAGCTCGTTTTGAAGCATCGCAGAGTTCGGGAGCATCCAAGAGTATTCAAGTCTGA | 3234 | 0.3933 | MGKEAVEDWRRKKQDIDMNNRNVKVHHGEGVFDYSKWKDLKVGDIVKVEKDEFFPADLILLSSSYDDAICYVETMNLDGETNLKVKQALEETSKLQEDSSFQNFKAIIKCEDPNANLYSFVGSLELEDQQHPLAPQQLLLRDSKLRNTDFIYGVVIFTGHDTKVMQNSTEPPSKRSTVEKRMDKIIYFLFFVLFFISFIGSIFFGIATREDLQNGVMKRWYLRPDDTTIYYDPKRAAVAAMLHFLTALMLYSYLIPISLYVSIEIVKVLQSTFINQDLHMYHEETDRPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFIKCSIAGIAYGQGVTEVERALARRKGVPLSQELTEDDNVPETSEAKSSIKGFNFMDERIMNGNWINEPHANVVQNFLRLLAVCHTAIPEIDEESGKVSYEAESPDEAAFVVAARELGFEFYERTQTTISVREFNPKSGKTTERSYKLLNILEFSSARKRMSVIVRDEEGKLILFSKGADSVMFERLARNGREFEEKTKQHIDEYADAGLRTLILAYRELDEEEYNLFNEEFMEAKNLVSADREQIVEEISEKIEKDLILLGATAVEDKLQNGVPECIDKLAQAGIKLWVLTGDKMETAINIGFACSLLRQGMKQIIISSDTPETKSLEKVEDKSVAEAAIKESVIHQLRKGKELLAESDENSEALALIIDGKSLTYALEDDVKDLFLELAVGCASVICCRSSPKQKALVTRLVKIKTGSITLAIGDGANDVGMLQEADIGIGISGVEGMQAVMSSDIAIAQFRFLERLLLVHGHWCYRRISSMICYFFYKNIAFGFTLFFYEIYASFSGQAAYNDWFLSLYNVFFTSLPVIALGVFDQDVSARLCLKFPLLYQEGVQNTLFSWKRILGWAFNGVLSATIIFFFCINAMEDQAFRKGGEVADLEVLGATMYTCVVWVVNCQMALSISYFTYIQHIFIWGGILFWYIFLLVYGTLDPSLSTTAYKVLIEACAPAPSYWLITLLVLVASLLPYFAYASIQMRFFPMFNQMIQWMRNDGQTTDPEYVNVVRQRSIRHTTVGFTARFEASQSSGASKSIQV | 1077 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Ssu1g1977 | 1077 | Gene3D | - | 4 | 169 | - | - | |
| Ssu1g1977 | 1077 | Gene3D | - | 425 | 581 | IPR023299 | GO:0000166 | |
| Ssu1g1977 | 1077 | SFLD | p-type atpase | 289 | 796 | IPR044492 | - | |
| Ssu1g1977 | 1077 | PANTHER | PHOSPHOLIPID-TRANSPORTING ATPASE | 1 | 1068 | - | - | |
| Ssu1g1977 | 1077 | Gene3D | - | 582 | 785 | IPR023214 | - | |
| Ssu1g1977 | 1077 | Pfam | Phospholipid-translocating P-type ATPase C-terminal | 773 | 1023 | IPR032630 | - | |
| Ssu1g1977 | 1077 | Pfam | Cation transport ATPase (P-type) | 414 | 506 | - | - | |
| Ssu1g1977 | 1077 | PRINTS | P-type cation-transporting ATPase superfamily signature | 307 | 321 | - | - | |
| Ssu1g1977 | 1077 | PRINTS | P-type cation-transporting ATPase superfamily signature | 631 | 641 | - | - | |
| Ssu1g1977 | 1077 | PRINTS | P-type cation-transporting ATPase superfamily signature | 745 | 764 | - | - | |
| Ssu1g1977 | 1077 | SUPERFAMILY | Calcium ATPase, transduction domain A | 29 | 167 | IPR008250 | - | |
| Ssu1g1977 | 1077 | SUPERFAMILY | HAD-like | 302 | 800 | IPR036412 | - | |
| Ssu1g1977 | 1077 | TIGRFAM | ATPase_P-type: HAD ATPase, P-type, family IC | 712 | 828 | IPR001757 | GO:0005215|GO:0005524|GO:0016021|GO:0016887 | |
| Ssu1g1977 | 1077 | SFLD | Haloacid Dehalogenase | 289 | 796 | - | - | |
| Ssu1g1977 | 1077 | PANTHER | PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE | 1 | 1068 | - | - | |
| Ssu1g1977 | 1077 | TIGRFAM | ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase | 3 | 1030 | IPR006539 | GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326 | |
| Ssu1g1977 | 1077 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 3 | 1023 | IPR023298 | - | |
| Ssu1g1977 | 1077 | CDD | P-type_ATPase_APLT_Dnf-like | 3 | 905 | - | - | |
| Ssu1g1977 | 1077 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 368 | 583 | IPR023299 | GO:0000166 | |
| Ssu1g1977 | 1077 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 309 | 315 | IPR018303 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Ssu1g1977 | Ssu-Chr1 | 55471728 | 55477385 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Ssu1g1977 | 1 | 1069 | Primary Pumps ATPases | AT1G68710 | 71.702 | 0.0 | 1663 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Ssu1g1977 | K01530 | K14802 | gmx:100797039 | 1991.08 |
Event-related genes