Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1975 ATGGAGCCCATGGACATCGTTGGGAAAGCCAAGGAAGACGCTTCGCTTCCTAAAGCGACAATGACGAAAATTATCAAAGAGATGTTGCCCCCGGACGTGCGTGTCGCCAGAGATGCGCAGGATTTATTGATCGAATGTTGTGTCGAGTTTATAAACCTCGTCTCGTCTGAGTCCAATGATGTCTGTAACAAAGAGGAAAGAAGGACGATTGCACCGGAGCACGTGTTGAAGGCTTTAGGGGTTCTTGGATTTGGCGAGTACATTGAGGAAGTTTATGCAGCATATGAACAGCACAAGCTGGAGACAATGCAAGACGCTTTAAAAGGTGCCAAGTGGAGCAACAGAGCTGAGATGACTGAGGAAGAAGCATTGGCTGAACAGCAAAGGATGTTTGCAGAGGCACGTGCTAGAATGAATGGAGGAGCCATTACTTCCAAGCAGCCAGACGCTGACCAAAGTTTAGAGAGCTAA 471 0.4777 MEPMDIVGKAKEDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNDVCNKEERRTIAPEHVLKALGVLGFGEYIEEVYAAYEQHKLETMQDALKGAKWSNRAEMTEEEALAEQQRMFAEARARMNGGAITSKQPDADQSLES 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1975 156 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Ssu1g1975 156 PANTHER PROTEIN DR1 HOMOLOG 1 155 IPR044255 -
Ssu1g1975 156 SUPERFAMILY Histone-fold 12 143 IPR009072 GO:0046982
Ssu1g1975 156 Gene3D Histone, subunit A 5 143 IPR009072 GO:0046982
Ssu1g1975 156 Coils Coil 115 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1975 Ssu-Chr1 55436578 55439971 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1975 1 152 CCAAT-DR1 Transcription Factor Family AT5G23090 83.117 5.88e-93 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Ssu1g1975 CBFD_NFYB_HMF 1.5e-22 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1975 K21751 - gmx:547635 301.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1975 1 55436578 55439971 Ssu1g1975 1 55436578 55439971 ECH