Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1971 ATGGCCGAAGCAGAGCACACCGATCCCGCCTCGCCCAAATGCGAGGACCAAACCACAAGCAGCAAGAAGAAGCTGCGCAAGAGGAAAAGACCTCATAAGACTGAGCAGAAACAAGAGGATGAGAAGATTGATAGTGCGCAGACACAAtccgaagaagaagaaaaagaagaagagacaAAGACGAACAATAACGTCACATCTGGAATCATGAGCAACGAGTCTTTCACCTCTCTGGGCTTGTCCGAACCCACTTCTAAAGCCATTACGGACATGGGCTTCCACCGTATGACTCAGATTCAAGCGAGGGCAATTCCGCCGCTCTTGATCGGGAAGGACGTTCTGGGTGCGGCGAGAACGGGTGCCGGGAAAACCCTAGCGTTTCTAGTTCCGGCGGTGGAGTTGCTTTACAGCGTTCAGTTCACGCCACGTAACGGAACGGGTGTTGTTGTGATATGCCCAACGAGGGAGCTCGCGATTCAGACGCACGCTGTGGCGAAGGAGCTGCTCAAATACCATTCGCAAACGCTCGGGTTGGTGATTGGGGGTTCGGGGAGGAAGGGAGAGGCCGAGCGCATTGTTAAAGGGGTTAACCTCTTGGTGGCGACCCCGGGTCGGCTTCTCGATCACCTTCAAAACACGAAGGGgttcatatataaaaacttgAAGTGCCTCATGATTGATGAAGCCGACAGGATATTGGAAGCAAACTTTGAGGAGGAGATGAAGCAGATTATTAACATACTTCCAAAGAAAAGGCAAACAGCTTTGTTTTCAGCTACACAAACAAAGAAGGTTGAGGATCTTGCTCGCTTATCATTTCAAACAACTCCTATCTATATTGATGTAGATGACGGGAGAAAAAAGGTCACAAATGAAGGATTGCAGCAGGGCTATGTTGTTGTTCCCTGTGCTAAGCGATTTGTTGTTCTCTATTCATTCTTGAGGAGATATCAATCAAAAAAAGTGATGGTCTTTTTCTCTTCATGCAACTCTGTCAAATTCCATGCAGATCTTCTCAAGTGCACTGGGTTGGACTGCTTAAATATTCATGGAAAACAAAAGCAACATGCCCGGACTACTACATTCTTCAATTTCTGCAAAGCAGAAAAGGGGATCTTGCTCTGTACTGATGTTGCTGCTCGTGGACTTGACATACCTGATGtgGACTGGATTGTGCAATATGATCCACCTGATGAACCAAAGGAATATATCCATAGGGTTGGTAGAACAGCTCGTGGGGAAGGTGGAAAAGGAAATGCTTTACTTTTCCTGATTCCTGAAGAATTGCAATTTCTTCACTATTTGAAGGCAGCGAAGGTTCCTGTGAAAGAGTATGCATTTGATGATAAGAAGCTTGCAAATGTACAATCTCAACTGGAGAAGTTGGTAGCTGGCATTTATCATTTAAACAATATGGCTAAAGATGCATATAGGTCATATATATTAGCATACAATTCACATTCTATGAAAGATATATTCAATGTTCACCGCCTCGATTTACAGGCTGTTGCTGCTTCATTCTGTTTTACAAATCCACCGAAGGTGAATCTGAACATGGATAGCAGTGCTTCAAAGCATAGGAAGAAAATACGCAAAGTGGAAGGAAGGAGAAGATGA 1617 0.4397 MAEAEHTDPASPKCEDQTTSSKKKLRKRKRPHKTEQKQEDEKIDSAQTQSEEEEKEEETKTNNNVTSGIMSNESFTSLGLSEPTSKAITDMGFHRMTQIQARAIPPLLIGKDVLGAARTGAGKTLAFLVPAVELLYSVQFTPRNGTGVVVICPTRELAIQTHAVAKELLKYHSQTLGLVIGGSGRKGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIINILPKKRQTALFSATQTKKVEDLARLSFQTTPIYIDVDDGRKKVTNEGLQQGYVVVPCAKRFVVLYSFLRRYQSKKVMVFFSSCNSVKFHADLLKCTGLDCLNIHGKQKQHARTTTFFNFCKAEKGILLCTDVAARGLDIPDVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLHYLKAAKVPVKEYAFDDKKLANVQSQLEKLVAGIYHLNNMAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFTNPPKVNLNMDSSASKHRKKIRKVEGRRR 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1971 538 CDD DEADc_DDX18 84 281 IPR044773 GO:0003724|GO:0005524
Ssu1g1971 538 Coils Coil 36 63 - -
Ssu1g1971 538 Gene3D - 16 283 IPR027417 -
Ssu1g1971 538 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 145 435 IPR027417 -
Ssu1g1971 538 MobiDBLite consensus disorder prediction 1 80 - -
Ssu1g1971 538 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 309 463 IPR001650 -
Ssu1g1971 538 MobiDBLite consensus disorder prediction 62 80 - -
Ssu1g1971 538 CDD SF2_C_DEAD 294 424 - -
Ssu1g1971 538 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 104 279 IPR014001 -
Ssu1g1971 538 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 225 233 IPR000629 -
Ssu1g1971 538 SMART helicmild6 333 414 IPR001650 -
Ssu1g1971 538 Pfam DEAD/DEAH box helicase 97 268 IPR011545 GO:0003676|GO:0005524
Ssu1g1971 538 Pfam Helicase conserved C-terminal domain 309 413 IPR001650 -
Ssu1g1971 538 MobiDBLite consensus disorder prediction 518 538 - -
Ssu1g1971 538 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 73 101 IPR014014 GO:0003724
Ssu1g1971 538 SMART DUF4217_3 454 517 IPR025313 -
Ssu1g1971 538 SMART ultradead3 92 297 IPR014001 -
Ssu1g1971 538 MobiDBLite consensus disorder prediction 1 22 - -
Ssu1g1971 538 Pfam Domain of unknown function (DUF4217) 455 515 IPR025313 -
Ssu1g1971 538 Gene3D - 290 534 IPR027417 -
Ssu1g1971 538 PANTHER RNA HELICASE 18 519 - -
Ssu1g1971 538 MobiDBLite consensus disorder prediction 33 61 - -
Ssu1g1971 538 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 51 18 519 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1971 Ssu-Chr1 55392874 55399572 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1971 72 432 Eukaryotic Initiation Factors Gene Family AT3G13920 31.694 2.81e-46 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1971 K13179 - gmx:100798290 980.704
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1971 1 55392874 55399572 Ssu1g1971 1 55392874 55399572 ECH