Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1968 ATGGACGCGCGACGCGCCTCGCGGGCCATCGTTGACCCCAAAGTCAGGCGCGTCGGTTTCTTCGCTCCGCAACCCGAACCCGACGCGCCGCCCCTCTTGGACTCTCCCGCTCCCAACACCACCGTGATTCCGCCGCCGCGTTATCTCTCCGCCGCCGTGCCCGTCCCCGACACCGGGCTTCGGCGCCAGGCCTCCGGCGACCTCGTGACAATTGGGAGCTACAAACCCGCCGAGTCGCTTCTCGGAACCTCGCCGGCGGCGTCGTCGCCTTCTCCGAGCCTCGTCGGTATCCGCGACAGAGAGTTCTCCGAGGACTCTTCCGCCGCCGGCTGGTTCCGTTGCAGCGACTCGAGTTTTTCCGGCGTAGGGTTTGACTTGCCGGCCGTGAAGCCTCCGGAGAATTCGCCGGCGGCGAATGCGAAAAACCTTTCCGCAGGCACTGAAAAGAGGGAAGAGGCTGCCAAAGAAGTATGCCCTGATCTGCCATCACTTTCAAAGCCACTAAAAGCAAAAACTACGAAGGCTGAGAGACGAGCATTGCAGGAGGCACAAAGAGCAGCAAAAGCTGCTTCTAAAGCTGATGGAAACACAGCAGTTGCTGAATCTGGGAGAGCAGCCCCCAGTAAAAGTATGAGGCAATCTTCACAAAAGAAAGACGGTCCTCTTGTTACGTCATCGGTAGCTACTGACAAAAAATCAGGAGATCGTCCTTTggagaaagagaggaaaaaagatGCTCCTCCTCCACGAATGCAATTTGATGATAAAAACAGAGTGGAAAAGGCAAAAAGGCGTGCAGTAGTGGATCAAACTGAAGCTAGAAACAGAGTTGAATTGTTTCGCCATTTGCCTCAATATGAACATGGGACTCAGCTTCCTAAACTTGAATCAAAGTTTTTCCAACTTGATTTTGTGCATCCTGCTGTGTTTAAGGTTGGATTGCGTTATTTGGCAGGAGATATATCAGGGAGTAATGCCCGATGTATTGAAATGCTTAGAGCATTTCAAGAAGCCATTATAGACTACTCCACACCGCCTGCAAAAGTCCTTGTCAGGGATTTAACGGCAAAAATCAGTagttatgtttcattttttactgAATGCAGACCACTTTCTATTAGCATGGGAAATGCAATTAGGTTTGTAAAGAGTCGTATTGCCAAATTGCCTTTAAGTCATACTGAATCTGAAGCAAAAGCAGCTCTTTGTTCTGATATCAATCGattcattaatgaaaaaatagttcTTGCTGATAAGGTGATTGTTGGACATGCTGCTACAAAGGTTAGGGATGGAGACGTTCTTCTTACATATGGATCATCATGTGTTGTTGAGATGATTCTTTTATATGCCCATGATCTTGGGAAACAGTTCCGTGTTGTGGTGGTTGACTCACGACCAAAGCTTGAAAGCCAGGCCTTACTTCGTAGGCTTGTGGCTAATGGCCTGAGTTGTACATATACCCATATAAATGCCGTTTCTTATGTCATGCATGAGGTCACACGAGTTTTTTTGGGAGCTTCTTCCATTCTGTGTAATGGAACTGTATATTCAAGGGTTGGGACTGCATGTGTTGCAATGGTGGCTTATGCATTTCGTGTTCCTGTATTGATCTGTTGTGAAGCTTATAAGTTTCATGAAAGGGTGCAACTTGATTCAATATGTTCTAATGAACTAGGTGACCCAGATGCTGTTGCCATGGTTCCTGGAAGAGTGGATGTCAATTATCTGGACAATTGGACTAGTCAAGACAACTTGCAGCTTCTGAATTTGTTTTATGATGCTACTCCTTCAGATTACGTATCGGCCATTGTTACAGATCATGGAATGATCCCTCCTACAAGTGTGCCCGTAATTGTGCGCGAGTATGGACGAGAGCACCTAATCTAG 1890 0.4672 MDARRASRAIVDPKVRRVGFFAPQPEPDAPPLLDSPAPNTTVIPPPRYLSAAVPVPDTGLRRQASGDLVTIGSYKPAESLLGTSPAASSPSPSLVGIRDREFSEDSSAAGWFRCSDSSFSGVGFDLPAVKPPENSPAANAKNLSAGTEKREEAAKEVCPDLPSLSKPLKAKTTKAERRALQEAQRAAKAASKADGNTAVAESGRAAPSKSMRQSSQKKDGPLVTSSVATDKKSGDRPLEKERKKDAPPPRMQFDDKNRVEKAKRRAVVDQTEARNRVELFRHLPQYEHGTQLPKLESKFFQLDFVHPAVFKVGLRYLAGDISGSNARCIEMLRAFQEAIIDYSTPPAKVLVRDLTAKISSYVSFFTECRPLSISMGNAIRFVKSRIAKLPLSHTESEAKAALCSDINRFINEKIVLADKVIVGHAATKVRDGDVLLTYGSSCVVEMILLYAHDLGKQFRVVVVDSRPKLESQALLRRLVANGLSCTYTHINAVSYVMHEVTRVFLGASSILCNGTVYSRVGTACVAMVAYAFRVPVLICCEAYKFHERVQLDSICSNELGDPDAVAMVPGRVDVNYLDNWTSQDNLQLLNLFYDATPSDYVSAIVTDHGMIPPTSVPVIVREYGREHLI 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1968 629 PANTHER NAGB/RPIA/COA TRANSFERASE-LIKE SUPERFAMILY PROTEIN 1 628 - -
Ssu1g1968 629 SUPERFAMILY NagB/RpiA/CoA transferase-like 304 623 IPR037171 -
Ssu1g1968 629 MobiDBLite consensus disorder prediction 21 45 - -
Ssu1g1968 629 Gene3D - 417 623 IPR042529 -
Ssu1g1968 629 MobiDBLite consensus disorder prediction 232 267 - -
Ssu1g1968 629 PANTHER TRANSLATION INITIATION FACTOR EIF-2B 1 628 - -
Ssu1g1968 629 MobiDBLite consensus disorder prediction 207 231 - -
Ssu1g1968 629 Pfam Initiation factor 2 subunit family 321 613 IPR000649 GO:0044237
Ssu1g1968 629 MobiDBLite consensus disorder prediction 24 43 - -
Ssu1g1968 629 MobiDBLite consensus disorder prediction 123 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1968 Ssu-Chr1 55362383 55367499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1968 1 629 Eukaryotic Initiation Factors Gene Family AT5G38640 58.050 0.0 714
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1968 K03680 - gmx:100778711 1034.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1968 1 55362383 55367499 Ssu6g1120 6 18313430 18316932 ECH
Ssu1g1968 1 55362383 55367499 Ssu1g1968 1 55362383 55367499 ECH