Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1962 ATGCAATCTCAAACTTCAGACACGTTTCCCTCTCACAATGGCAATGACCCAATTTCCTATTATGACCCAGCATTCTGCTACAGCAGGCCCTTTTCCATTGACTCTGGAAGCAGCCCAACatcaaaacaagaaaacaacTGTGATCTTCCCTCTCCACCTCCTTTGTCCTTTTTCCACTTTCCCTTTGAAGACCCTCAAATTTTCCTGGAACAACACCACGATTTCCTTCTTCAGTTTCACCATCAATCTCTACCTCAAGGCCCTGAGCCTCAACCTGTCAATGCCATGGAGGCTTCTACTAATAAAAACAGTGATCAGATCCCAAGAAAAAGACCTGCCAAGAGAGACAGGCACAGCAAGATCAACACCGCAAGAGGACTGAGGGATCGGAGAATGAGACTTTCCCTTGATGTTGCAAGGAGGTTTTTCGGCTTGCAAGATATGCTAGGCTTTGACAAAGCTAGCAAGACCGTGGAGTGGTTACTAAACCAAGCAAAAGCTGAAATCAATCGAATAGCAAAagggaagaaaaggaagaagaaggatCATGATCACAATTGTGGCAGTGGTGGGGCCAAGGGTGCTTCTTCAAGTTCGGAATGTGAAGAAGGTGTGTCTAGTCTTGATGAGGTTGTAGTTGGTGGTGATCAAGAACAACAAGAAGAGAGGGTGGACAAAGTTGTGAAGAGAAGGGTCAAGCATTCCAGGAAGATCAGTGTATTCCATCCTCTTACAAAGGAGTGCAGGGAAAGGGCAAGAGAGAGGGCAAGAGAGAGGACAAGAGAAAAGATGAGAAGTCGTGGACTACTTGATGAATCAAAGCAATGCAGAGAGGAAACAAATCAAGATCTGAGCAAATTGCGTTCCTGGAACCCCTTTGAAACTGGAGAAGAATCCGGTACCAAGAGCCATAGCGTGAATCCTTCCTTGGACGTGATCGCTGAGGCTAAAGATCAAAGCTACCACTCAAAGGAGCATTTGGAGACTGCAGAGGCCATGGCTCATGATGATGATTCTTTGGTTATTTTGAGCAAATGGAGCCCCTCCTTGATTTTCAATAACACTGGATTCTCTCAACACCAATTTGCAGAATTTCAGTCCCTGGGAAAACCGTGGGAGGCCTAA 1125 0.4418 MQSQTSDTFPSHNGNDPISYYDPAFCYSRPFSIDSGSSPTSKQENNCDLPSPPPLSFFHFPFEDPQIFLEQHHDFLLQFHHQSLPQGPEPQPVNAMEASTNKNSDQIPRKRPAKRDRHSKINTARGLRDRRMRLSLDVARRFFGLQDMLGFDKASKTVEWLLNQAKAEINRIAKGKKRKKKDHDHNCGSGGAKGASSSSECEEGVSSLDEVVVGGDQEQQEERVDKVVKRRVKHSRKISVFHPLTKECRERARERARERTREKMRSRGLLDESKQCREETNQDLSKLRSWNPFETGEESGTKSHSVNPSLDVIAEAKDQSYHSKEHLETAEAMAHDDDSLVILSKWSPSLIFNNTGFSQHQFAEFQSLGKPWEA 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1962 374 Pfam TCP family transcription factor 113 266 IPR017887 -
Ssu1g1962 374 MobiDBLite consensus disorder prediction 174 228 - -
Ssu1g1962 374 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 42 346 IPR005333 GO:0003700
Ssu1g1962 374 MobiDBLite consensus disorder prediction 251 284 - -
Ssu1g1962 374 MobiDBLite consensus disorder prediction 85 126 - -
Ssu1g1962 374 MobiDBLite consensus disorder prediction 85 106 - -
Ssu1g1962 374 PANTHER TRANSCRIPTION FACTOR TCP18 42 346 - -
Ssu1g1962 374 ProSiteProfiles R domain profile. 246 263 IPR017888 -
Ssu1g1962 374 MobiDBLite consensus disorder prediction 285 308 - -
Ssu1g1962 374 ProSiteProfiles TCP domain profile. 114 172 IPR017887 -
Ssu1g1962 374 MobiDBLite consensus disorder prediction 251 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1962 Ssu-Chr1 54980013 54981574 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1962 86 260 TCP Transcription Factor Family AT3G18550 44.103 7.87e-34 128
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Ssu1g1962 TCP 3.8e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1962 - - pvu:PHAVU_009G200600g 474.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1962 1 54980013 54981574 Ssu6g1112 6 18183512 18184921 ECH
Ssu3g0250 3 4551076 4552286 Ssu1g1962 1 54980013 54981574 ECH
Ssu8g2093 8 54926793 54928125 Ssu1g1962 1 54980013 54981574 ECH
Ssu1g1962 1 54980013 54981574 Ssu1g1962 1 54980013 54981574 ECH