Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1958 ATGCAGCCATTTCACATGACCTCAGCACCTATGGCTCCTCCATGGGTTCAAGAGCTCCAGCTCCGTCACTTGAGCATTCCTGTAACCATTGATAAAATGCTTTCAGTTATGCCATCAAGGCCTATTCCCGTTAAACCAGGTGACAGTTTATACCTTTCCAACCTTGATGACATGATTGGAGCTCGTGTTTTTACACCTACAGTGTACTTTTATCAATCAGACAACACGAGTTCTTCCCAAAAACCTGTCACAAAAATACTACAATGTGCTCTCGCTGATGTTTTAGTGCCTTATTACCCTCTCTCAGGCAGGCTCAGAGAGACCAAGAATGGTAAACTAGAAGTGTTTTTTGGAACAGAACAAGGAGCACTCATTGTTGAGGCACGATCTGATATTGCCTTGGCTGAATTAGGAGACCTCACAGCTCCAAACCCAGATTGGGAGCCTTTGATCTTCAAGTTTCCCAACGAAGAGCAATACAAAGTCCTTGAAATGCCACTGGTCATTGCTCAGGTTACCCTTTTCCGCTGTGGTGGCTTTAGCCTTGGTTTGAGGCTATGCCATTGCATCTGTGATGGCCTGGGAGCTATGCAGTTCCTAGGTGCATGGGCTGCCACTGCAAGAACAGGGACGCTGGTTACAGACCCTGAGCCCTGCTGGGACAGGGAAATTTTTAGGCCTCGTGACCCACCTGTGGTGAAATTTCCCCACATGGAGTTTATGAGAATTGAAGAGGGCTCCAACCTGACGATGACACTATGGCAAACCAAGCCTGTTCAGAAGTGTTACAGGATCAAGCGTGAGTTCCAGAACCGCGTGAAAGCTATTGCTCAGCCATATGATGCTGCAGGTTGCACCACTTTTGATGCCATGGCAGCTCATATTTGGAGATCTTGGGTGAAAGCTCTAGATGTAAGGCCCCTAGATTACCAGCTTAGGTTAACATTTTCAGTCAATGCTCGGCAGAAGCTTAGAAACCCACCACTGAGAGAAGGGTTTTATGGCAATGTGGTGTGTGTTGCATGCACAACAAGCACTGTCTCTGAGCTTGTGCATGGACAGCTCCCAGAGACTACCCGTTTGGTTCGTGAGGCTAGACAGAGTGTCTCAGAGGAGTATTTGAGATCCACAGTGGATTGTGTTGAAGTGGATAGGCCAAGGCAGCTTGAGTTTGGTGGTAAACTAACAATAACTCAATGGACGAGGTTCTCGATATACAAGTGTGCAGATTTTGGGTGGGGTAGGCCACTCTATGCTGGTCCTATAGATTTAACACCCACGCCTCAAGTTTGTGTGTTTCTACCTGAAGGGGAGGCTGATTGTAGTGGTGGTTCTATGATTGTGTGCATATGCTTGCCTGAGTCTGCTGCTCAGAAGTTTACACGAGCCTTATTGCTCGATTCAGTTTTTTGA 1413 0.4699 MQPFHMTSAPMAPPWVQELQLRHLSIPVTIDKMLSVMPSRPIPVKPGDSLYLSNLDDMIGARVFTPTVYFYQSDNTSSSQKPVTKILQCALADVLVPYYPLSGRLRETKNGKLEVFFGTEQGALIVEARSDIALAELGDLTAPNPDWEPLIFKFPNEEQYKVLEMPLVIAQVTLFRCGGFSLGLRLCHCICDGLGAMQFLGAWAATARTGTLVTDPEPCWDREIFRPRDPPVVKFPHMEFMRIEEGSNLTMTLWQTKPVQKCYRIKREFQNRVKAIAQPYDAAGCTTFDAMAAHIWRSWVKALDVRPLDYQLRLTFSVNARQKLRNPPLREGFYGNVVCVACTTSTVSELVHGQLPETTRLVREARQSVSEEYLRSTVDCVEVDRPRQLEFGGKLTITQWTRFSIYKCADFGWGRPLYAGPIDLTPTPQVCVFLPEGEADCSGGSMIVCICLPESAAQKFTRALLLDSVF 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1958 470 Gene3D - 247 464 IPR023213 -
Ssu1g1958 470 Gene3D - 25 242 IPR023213 -
Ssu1g1958 470 Pfam Transferase family 27 461 - -
Ssu1g1958 470 PANTHER F21B7.2 22 466 - -
Ssu1g1958 470 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 22 466 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1958 Ssu-Chr1 54864854 54866266 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1958 40 465 Monolignol Biosynthesis Gene Families AT5G48930 30.435 2.04e-53 183
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1958 K15400 - gmx:100802814 882.863