Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1953 ATGGCATTGCTCATTCTCCTTCACGCGATGCGTGTGGCGGCAATCGTGCTGATCTTCATTACACTTGTGCAGCCGAGTGAGCGAGTCAATGCGGAGCCGACTCAGGACAAGCAAGCCCTCCTCGCATTCATCTCCCTCACCCCGCACGCGAACCGGGTCCAGTGGAACACGTCCGGTTCGGCCTGCGACTGGTTCGGCGTCCAATGCGACCCCTCACGTTCCTTCGTCTATTCCCTTCACCTCCCCGCCGTGGGCCTCGTGGGCCCCATCCCTCCCAACACGATCGGTCGCCTCACACAGCTTCGAGTCCTCAGTCTCCGCTCCAACGCCCTCACCGGCGATATCCCCGCCGATTTCTCCAATCTCACCTTCCTCCGCAACCTTTACCTCCAAAACAACCGCATCTCCGGCGAGTTCCCCGCCGCCTTGACTCGCCTGACTCGGTTGACTCGCCTCGAACTCTCCTCCAACAACTTCACCGGCAAAATCCCGTTCTCGATCAACAATCTCGCTCACTTAACCGGTCTCTTCCTAGAAAACAATTCTTTCTCGGGTAACCTTCCGAGCATTACGATAAAATTAGCGAACTTCGACGTCTCCAATAACCGCCTCAACGGTTCCATCCCCAAGTCCCTCTCACATTTCCCTGCAACGTCGTTTTCTGGAAACAACGGCCTCTGCGGGAAACCGTTACCACCGTGCAACCCTTTTTTCCCGGCTCCGGCTCCTTCGCCTTCGTCTGTTCCCGTTCCACCGGCTGCGCCGGTGCCCGGGAAGTCCAAGAGGCTCTCCACCGCCGCCGTTGTGGGAATTGCGGTCGGGTCTGCTTTACTTGCGCTGCTGCTGCTGTTGCTAATTCTGTTTGTGTGCTGCCGGCGACGGCGGCGGAGACCGGCGAAGCCGCCGCAGGGCGTGGCGGCACGTGGCGTGGCGGCGGAGGGTGGAACGTCGTCGTCGAAGGATGACATTACGGGGTCCGTGGAGGCTGCGGAGAGGAACAAGCTGGTGTTCTTGGAGGGTGGGGTGTATGGATTTGGGTTGGAGGATTTGCTGAGGGCCTCAGCGGAGGTTTTGGGAAAGGGGAGTATGGGGACTTCTTATAAGGCGATTTTGGAGGATGGGACCACGGTGGTGGTGAAGAGGTTGAAGGATGTGGCGGTTACGAAGAGAGAGTTCGAGGCGCAAATGGAGGTTGTTGGGAAGATTAAGCACGAGAATGTGCTTCCTCTCAGAGCCTTTTACTACTCCAAGGATGAGAAATTGCTCGTTTACGATTACATGACCGCCGGTAGCTTGTCTGCGCAGCTTCACGGGAGCAGAGGGTCTGGGCGAACGCCGCTAGATTGGGACACCCGAATGAGAATAGCACTGGGAGCCGCAAGGGGCCTCGCGTGCCTCCACGTGTCAGGCAAAGTGGTCCACGGCAACATCAAATCCTCCAACATCCTCCTCCACCCGAACCACGAAGCCTGTGTTTCGGACTTCGGACTCAACCCGATATTCGCCAACCCGGTTCCCTCGAACCGCGTCGCGGGTTACCGGGCCCCGGAGGTTCTCGAAACCCGAAAGGTCACTTTCAAATCCGACGTGTACAGCTTCGGCGTGCTGGTGCTGGAGCTTCTAACCGGCAAGGCGCCGAACCAAGCCTCGCTCAGCGAGGAAGGGATTGACCTTCCGCGGTGGGTGCAGTCGGTGGTTCGCGAAGAGTGGACCGCTGAAGTGTTCGACGCGGAACTCATGAGGTACCATAACATTGAAGAAGAGATGGTTCAGTTGTTGCAGATTGCGATGACGTGCGTTTCGCTCGTGCCGGATCAGAGGCCCAACATGGAAGAGGTGGTGCGCATGATCGAGGATATTAGCCGCAGCGAGACCACCGATGAAGGGTTGCGCCAGTCGTCTGATGATCCTTCCAAAGGATCGGACGGTCAAACGCCCCCTCAGGAGTCTAGGACTACTCCTCGGTCGGACACGTCATAG 1980 0.5818 MALLILLHAMRVAAIVLIFITLVQPSERVNAEPTQDKQALLAFISLTPHANRVQWNTSGSACDWFGVQCDPSRSFVYSLHLPAVGLVGPIPPNTIGRLTQLRVLSLRSNALTGDIPADFSNLTFLRNLYLQNNRISGEFPAALTRLTRLTRLELSSNNFTGKIPFSINNLAHLTGLFLENNSFSGNLPSITIKLANFDVSNNRLNGSIPKSLSHFPATSFSGNNGLCGKPLPPCNPFFPAPAPSPSSVPVPPAAPVPGKSKRLSTAAVVGIAVGSALLALLLLLLILFVCCRRRRRRPAKPPQGVAARGVAAEGGTSSSKDDITGSVEAAERNKLVFLEGGVYGFGLEDLLRASAEVLGKGSMGTSYKAILEDGTTVVVKRLKDVAVTKREFEAQMEVVGKIKHENVLPLRAFYYSKDEKLLVYDYMTAGSLSAQLHGSRGSGRTPLDWDTRMRIALGAARGLACLHVSGKVVHGNIKSSNILLHPNHEACVSDFGLNPIFANPVPSNRVAGYRAPEVLETRKVTFKSDVYSFGVLVLELLTGKAPNQASLSEEGIDLPRWVQSVVREEWTAEVFDAELMRYHNIEEEMVQLLQIAMTCVSLVPDQRPNMEEVVRMIEDISRSETTDEGLRQSSDDPSKGSDGQTPPQESRTTPRSDTS 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1953 659 MobiDBLite consensus disorder prediction 619 635 - -
Ssu1g1953 659 MobiDBLite consensus disorder prediction 619 659 - -
Ssu1g1953 659 Pfam Leucine rich repeat N-terminal domain 34 70 IPR013210 -
Ssu1g1953 659 Gene3D Ribonuclease Inhibitor 33 192 IPR032675 -
Ssu1g1953 659 PANTHER OS05G0480400 PROTEIN 17 639 - -
Ssu1g1953 659 Gene3D Ribonuclease Inhibitor 194 234 IPR032675 -
Ssu1g1953 659 Gene3D Phosphorylase Kinase; domain 1 321 426 - -
Ssu1g1953 659 MobiDBLite consensus disorder prediction 636 659 - -
Ssu1g1953 659 SUPERFAMILY L domain-like 34 234 - -
Ssu1g1953 659 ProSiteProfiles Protein kinase domain profile. 352 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1953 659 Pfam Protein kinase domain 355 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1953 659 Gene3D Transferase(Phosphotransferase) domain 1 427 639 - -
Ssu1g1953 659 Pfam Leucine rich repeat 89 135 IPR001611 GO:0005515
Ssu1g1953 659 CDD STKc_IRAK 358 620 - -
Ssu1g1953 659 SUPERFAMILY Protein kinase-like (PK-like) 356 617 IPR011009 -
Ssu1g1953 659 PANTHER OS05G0588300 PROTEIN 17 639 - -
Ssu1g1953 659 MobiDBLite consensus disorder prediction 299 324 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1953 Ssu-Chr1 54670967 54674083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1953 15 642 Receptor kinase-like Gene Family AT5G58300 53.375 0.0 637
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Ssu1g1953 Pkinase 4.7e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1953 - - gmx:100784259 1007.67