Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1948 ATGGCATCACAAGCAGAACTAAGCATGGATTACAAGCCCTACAGCTACTCCACACCGCTGAAATCATTTGCAGATCAAACTGACCAGACCTACAAGCTCGAAGAGTTCCTTTCTCGCTTGGAGGAAGAACGTCTCAAGATTGATGCCTTCAAGCGCGAGCTTCCTCTCTGCATGCAACTCCTCACCAACGCTGTGGAGGCTTCAAGGCAGCAACTACAAGCCTTCAGATCAAACCAAGGCACAAGGCCAGTTCTCGAAGAATTCATACCCATAAAGCATTCAAACTCTCATCAAGAAAGCACTGAGAAGGCATCAAACATAACTGACAAGGCGAATTGGATGACATCTGCTCAACTATGGAGCCAAGCAAGCGAAGGAACCAAACCACAATCCACAGTTGCATCACCAAAAGAAGGTGCCGATATTGGGTTTAGCATAAGTCCTAAGCTAGCCCTAGACAACAAACATAGGAATGGGGGAGCCTTTTTACCATTCTCAAAAGAACGAAACTTGTGCCACGGATTAAGGGGTCTTCCCGAGTTGGCCCTTGCCTCTTCTGAGAAAGAAATGGAGAAGAAATGTGAAGAGGCAGAGAAATGTTCCAAAAGGGAGAATTCAGGCAAAGGAGGGAGTTGTGAAGGGGTTGCTGATCAGGGAAAAAGTGCTGCAGTTGCATCTGAGGCACAAACAACAAatactaccaccaccacaactaACACTACTGGCCAAACTCATAGGAAAGCAAGACGGTGTTGGTCACCGGACTTGCACCGTCGGTTTGTTAATGCTCTTCAAATGCTCGGTGGATCCCAAGTGGCCACCCCAAAACAGATTAGGGAGTTGATGAAGGTGGACGGTTTGACCAATGATGAAGTTAAAAGCCATCTCCAGAAATATAGGCTTCACACTAGAAGACCCGCTCCGAGCCTACAAACAGGAGCAACAACACCCCAGCTTGTAGTCCTAGGAGGAATTTGGGTGCCACCGGAATATGCCACGGCTGCGGCACACTCCGGTGGCCCTGCCCTTTATGCTCCACACACACCACCACCACACTACTGTGCAGCCACCCCAGTGCCCCAAGAATTCTACAACACAGCGCCGCCGCTGCCACTACTACCATCACCACACGACCACACCCTCCAACACCACCATTTTCACGTGTACAAGACAGCACCACGGACCCGAAGCTCTCCAGAATCGGAAGTCGACCTGTCAGAGAGCATTGAGGATGGGAAGTCGGAGAGCAGTAGCTGGAAAGGAGAGAGTGGAAAGAAGAAAGGGTTGGCAGCCCTAAGAGATCAAGAAGGGGAAGAGAGCACAGGGAGTGAGATCACTCTTAAATTCTAG 1350 0.4889 MASQAELSMDYKPYSYSTPLKSFADQTDQTYKLEEFLSRLEEERLKIDAFKRELPLCMQLLTNAVEASRQQLQAFRSNQGTRPVLEEFIPIKHSNSHQESTEKASNITDKANWMTSAQLWSQASEGTKPQSTVASPKEGADIGFSISPKLALDNKHRNGGAFLPFSKERNLCHGLRGLPELALASSEKEMEKKCEEAEKCSKRENSGKGGSCEGVADQGKSAAVASEAQTTNTTTTTTNTTGQTHRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDEVKSHLQKYRLHTRRPAPSLQTGATTPQLVVLGGIWVPPEYATAAAHSGGPALYAPHTPPPHYCAATPVPQEFYNTAPPLPLLPSPHDHTLQHHHFHVYKTAPRTRSSPESEVDLSESIEDGKSESSSWKGESGKKKGLAALRDQEGEESTGSEITLKF 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1948 449 Coils Coil 33 53 - -
Ssu1g1948 449 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 449 - -
Ssu1g1948 449 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 244 304 IPR017930 -
Ssu1g1948 449 MobiDBLite consensus disorder prediction 223 247 - -
Ssu1g1948 449 SUPERFAMILY Homeodomain-like 244 305 IPR009057 -
Ssu1g1948 449 Coils Coil 183 203 - -
Ssu1g1948 449 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 449 IPR044787 GO:0003700|GO:0006355
Ssu1g1948 449 MobiDBLite consensus disorder prediction 389 449 - -
Ssu1g1948 449 MobiDBLite consensus disorder prediction 400 443 - -
Ssu1g1948 449 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 247 302 IPR006447 GO:0003677
Ssu1g1948 449 Pfam Myb-like DNA-binding domain 249 300 IPR001005 -
Ssu1g1948 449 Gene3D - 246 304 - -
Ssu1g1948 449 Coils Coil 58 78 - -
Ssu1g1948 449 MobiDBLite consensus disorder prediction 223 248 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1948 Ssu-Chr1 54589211 54591761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1948 1 449 G2-like Transcription Factor Family AT2G03500 50.830 1.45e-125 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu1g1948 Myb_DNA-binding 9.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1948 - - gmx:100815048 720.309
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1090 6 17714104 17716731 Ssu1g1948 1 54589211 54591761 PCT