Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1946 ATGAAGGACCCTGAGGAGCACCAAGTGAAATCTAGAAGGCCTCTTCCGAAATCCACAGAACGTAGAAGAAGGTGTAGGAGAAGGAGCCAGTGCAAGCCAGAGAAATTACAAGAAGCAGAACTTGATTCACAGCTTGGTTCCTCTGCCACTTGTAAGAGTCTTGTGTTTCATCAAAGGCCTGGCTATGGCCAACTTGGGACTAAGTGTCTCATCAAAGCTAACCACTTCCTTGCAGATATATCAGTATCTGACTTGAGCCATTACAATGTTAAAATAACACCTGAAGTCACTTCTCGTAAAACAAGCAAGGCTATCATAGCAGAGTTGGTGAGGCTTTGCAGGAGCACTGACTTAGCCACGAGGCTCCCTGTGTATGATGGAGGAAGGAACCTTTACACTGCTGGTTTGCTTCCTTTTACATACAAAGAGTTCAATGTAACATTGAGTGAGGATGATGATGTTACCGGTGGTATCAGGGAAAGGGAGTTTAAGGTGGTAATCAAGTTTGCAACTCGTGTTAGCATGCATCAACTACGTGAGCTTCTTAGTGGGAAACAAGTGGACAATCCACAAGAAGCGCTAAGCGTCTTCGACATTGTGTTAAGGGAGCTTGCGGCTCAAAGTTACGTGTCAATTGGGAGGTTTCTCTATTCACCGGATTTAAGAAAACCGCAACAGTTGGGTGGTGGCCTTGAATCATGGAGAGGCTTCTACCAGAGTATAAGGCCTACTCAGATGGGATTGTCACTTAACATTGATATGTCATCAATGGCGTTTATTGAACCGCTACCTGTGATTGACTTTGTTGCTCAAATTTTGGGAAAAGATGTGCACTCAAAGCCATTGTCGGATGCGGATCGTGTCAAGATCAAAAAGGCCCTAAGAGGTGTAAAAGTTGAAGTTACACATAGAGGAAATTTTCGAAGGAAGTATAGAATATCAGGACTGACTTCACAGCCTACAAGGGAGCTTATTTTCCCTCTTGATGAGCAAATGAACATGAAATCAGTAGttgattattttcaagaaatgtATGGATTTACAATCAAATATTCTCATCTACCTTGCCTTCAAGTAGGAAGTCAAAGGAAGGTGAACTATTTGCCCATGGAGGCATGCAAGATAGTTGGGGGCCAGAGATATACAAAAGGGCTAAATGAAAAGCAGATAACTTCTCTGCTGAAGGTCTCATGCCAGAGACCCCGTGAACAAGAGACAGACATTTTACAGACAATTCAACAAAACAATTACGAGAATAATCCGTATGCAAAGGAGTTTGGCATCAGCATAGACAATAAGCTTGCATCAGTTGAGGCTCGGGTTCTTCCGCCTCCATGGCTCTTCTTTTCCTTGCAGTTGAAATATCATGACACtggaagagagaaagaatacttgCCACAAGTTGGTCAGTGGAATATGATGAACAAGAAAGTTATAAATGGAAGTACAGTAAGATATTGGGCATGTATCAACTTCTCACGAAGTGTACAGGAAAGTACAGCTCGCGGATTTTGCCAACAGTTAGTTCAGATGTGCCAAATCTCAGGCATGgAATTCAGACAGGACCCTGTGATTCCTATATATTCTGCAAGACCAGATCAGGTAAAGAAGGCTTTGAAGTACGTACATTCTGCTGCTATAGACAAACTTGATGGGAAAGAGCTAGAGTTGCTGTTTGCCATTCTTCCAGACAATAATGGTTCTCTGTATGGTGATCTCAAAAGAATCTGCGAAACAGATCTGGGGTTGATTTCTCAATGCTGCCTTACAAAACATGTATTCAAGATCAATAGACAGTACCTGGCTAATGTGGCTCTAAAAATCAATGTCAAGATGGGAGGAAGAAACACAGTTCTTTTGGATGCTTTAAGTTGGAGGATTCCACTGGTTAGTGATATTCCAACAATAATATTTGGAGCTGATGTAACCCATCCAGAATCAGGAGAGGATTCTTGTCCATCCATTGCTGCTGTTGTAGCCTCCCAGGACTGGCCCGAAGTAACAAAGTATGCAGGGTTGGTTTGTGCCCAGCCTCATCGGGAAGAACTCATTCAAGATCTTTTCAGATGTTGGAAAGATCCACAGAGGGGTGCAGTTTATGGTGGTATGATCAGGGAGCTTTTACTATCATTTAAGAAGGCAACTGGACAAAAACCATTGAGAATAATCTTTTACCGGGATGGGGTAAGTGAAGGACAGTTCTACCAGGTTTTGCTATATGAGCTTGATGCCATCCGTAAGGCTTGTGCATCTTTGGAACCTAGTTACCAACCTCCAGTAACATTTGTTGTTGTTCAAAAACGGCATCACACTAGACTCTTCGCAAACAATCATGACGACAGAAATAGCACTGATAAGAGTGGGAATATCTTACCTGGTACTGTGGTAGATTCTAAGATCTGTCATCCTTCTGAATTCGACTTCTACTTGTGCAGTCATGCAGGAATTCAGGGTACAAGTAGACCAGCACACTATCATGTCCTCTGGGATGAGAACAATTTTACTGCAGATGAAATTCAATCTCTAACCAACAATTTATGCTACACTTATGCAAGATGTACACGGTCTGTTTCTGTAGTGCCTCCAGCATACTATGCTCATCTAGCAGCCTACAGGGCTCGATTCTACATGGAACCTGATGTTGCTGAGATTACTAAACTGCGAGGTACAAGATCAAAAGAAGGGCCTGTTCGGCCACTGCCTGCTTTGAAAGAGAAGGTAAAGAATGTTATGTTTTACTGTTGA 2745 0.4204 MKDPEEHQVKSRRPLPKSTERRRRCRRRSQCKPEKLQEAELDSQLGSSATCKSLVFHQRPGYGQLGTKCLIKANHFLADISVSDLSHYNVKITPEVTSRKTSKAIIAELVRLCRSTDLATRLPVYDGGRNLYTAGLLPFTYKEFNVTLSEDDDVTGGIREREFKVVIKFATRVSMHQLRELLSGKQVDNPQEALSVFDIVLRELAAQSYVSIGRFLYSPDLRKPQQLGGGLESWRGFYQSIRPTQMGLSLNIDMSSMAFIEPLPVIDFVAQILGKDVHSKPLSDADRVKIKKALRGVKVEVTHRGNFRRKYRISGLTSQPTRELIFPLDEQMNMKSVVDYFQEMYGFTIKYSHLPCLQVGSQRKVNYLPMEACKIVGGQRYTKGLNEKQITSLLKVSCQRPREQETDILQTIQQNNYENNPYAKEFGISIDNKLASVEARVLPPPWLFFSLQLKYHDTGREKEYLPQVGQWNMMNKKVINGSTVRYWACINFSRSVQESTARGFCQQLVQMCQISGMEFRQDPVIPIYSARPDQVKKALKYVHSAAIDKLDGKELELLFAILPDNNGSLYGDLKRICETDLGLISQCCLTKHVFKINRQYLANVALKINVKMGGRNTVLLDALSWRIPLVSDIPTIIFGADVTHPESGEDSCPSIAAVVASQDWPEVTKYAGLVCAQPHREELIQDLFRCWKDPQRGAVYGGMIRELLLSFKKATGQKPLRIIFYRDGVSEGQFYQVLLYELDAIRKACASLEPSYQPPVTFVVVQKRHHTRLFANNHDDRNSTDKSGNILPGTVVDSKICHPSEFDFYLCSHAGIQGTSRPAHYHVLWDENNFTADEIQSLTNNLCYTYARCTRSVSVVPPAYYAHLAAYRARFYMEPDVAEITKLRGTRSKEGPVRPLPALKEKVKNVMFYC 914
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1946 914 ProSiteProfiles PAZ domain profile. 263 377 IPR003100 GO:0005515
Ssu1g1946 914 SMART DUF1785_2 210 262 IPR014811 -
Ssu1g1946 914 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 15 913 - -
Ssu1g1946 914 MobiDBLite consensus disorder prediction 1 15 - -
Ssu1g1946 914 ProSiteProfiles Piwi domain profile. 557 878 IPR003165 GO:0003676
Ssu1g1946 914 PANTHER PROTEIN ARGONAUTE 10 15 913 - -
Ssu1g1946 914 Pfam PAZ domain 267 393 IPR003100 GO:0005515
Ssu1g1946 914 MobiDBLite consensus disorder prediction 16 30 - -
Ssu1g1946 914 SMART PAZ_2_a_3 267 399 IPR003100 GO:0005515
Ssu1g1946 914 Pfam N-terminal domain of argonaute 68 201 IPR032474 -
Ssu1g1946 914 CDD Piwi_ago-like 421 877 IPR045246 -
Ssu1g1946 914 Gene3D - 441 620 - -
Ssu1g1946 914 Pfam Piwi domain 558 877 IPR003165 GO:0003676
Ssu1g1946 914 SUPERFAMILY Ribonuclease H-like 546 879 IPR012337 -
Ssu1g1946 914 CDD PAZ_argonaute_like 262 376 - -
Ssu1g1946 914 SUPERFAMILY PAZ domain 258 417 IPR036085 GO:0005515
Ssu1g1946 914 Pfam Mid domain of argonaute 466 543 IPR032473 -
Ssu1g1946 914 Pfam Argonaute linker 1 domain 211 260 IPR014811 -
Ssu1g1946 914 SMART Piwi_a_2 557 878 IPR003165 GO:0003676
Ssu1g1946 914 Pfam Argonaute linker 2 domain 405 447 IPR032472 -
Ssu1g1946 914 Gene3D paz domain 257 381 - -
Ssu1g1946 914 MobiDBLite consensus disorder prediction 1 39 - -
Ssu1g1946 914 Gene3D - 626 914 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1946 Ssu-Chr1 54510193 54517138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1946 56 914 Eukaryotic Initiation Factors Gene Family AT5G43810 74.625 0.0 1392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1946 K11593 - gmx:100810235 1741.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1946 1 54510193 54517138 Ssu1g1946 1 54510193 54517138 ECH
Ssu6g1087 6 17663883 17670395 Ssu1g1946 1 54510193 54517138 PCT