Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1945 ATGGTTTCATCTGCCTCCAACGGCAGTTCCAGCGGAAGCAAGACGAGGGACATCGACGGCGACCTCGCCGGCGTGGGCTACAAAGTCCGGTCATCGGAGCTGCCTCAGGTGGCTCAAAATATCGAGCGTTTAGAGAACGTGTTTGGGAACTCATCCAGCGACATATCTCAACTAGCTTCCGACACGGTCATGTACAACCCCTCCGACATAGGTTCCTGGTTGGACACGCTCCTCTCCGAGTTCGACCAAACGGTGTCGTTACCCTACGATCTGTCGGACCTACCCGATCTGGCCGCGGATCAAAACCCCCAACCAACGCTCGTAACGACCGTGGAAGAAGACTCGGGGATAAGACTCGTCCACATGCTGATGACGTGTGCGGACTCCGTGCAACGTGGCGACCTCCCATTTGCTGGCTCCCTCATCGAGAACATGCAGGGGTTGTTGGCGCACGTGAACACCAACTGCGGCATCGGGAAAGTCGCCGGCTACTTCATCGACGCCCTGCGCCGCCGCATCTTCGCGCAAAACGTCTTTCTAACCACCCCCTACGAGAACGACGTCCTCTACCACCACTACTACGAGGCGTGCCCTTACCTAAAGTTCGCGCACTTCACCGCGAACCAGGCGATCTTGGAGGCCTTCAACGGCCACGATTGCGTCCACGTCATCGACTTCAACCTCATGCAGGGCCTCCAGTGGCCCGCGCTGATTCAGGCCCTCGCGCTTCGGCCCGGTGGGCCCCCCTTGCTGCGGCTCACCGGCATTGGGCCTCCCTCGCCGGACGACCGCGACACGCTCCGCGAAATCGGGCTGCGGCTCGCGGAGCTGGCGCGCTCCGTGAACGTGCGCTTCGCGTTCCGCGGCGTCGCGGCGTGGCGGCTGGAGGACGTGAAGCCGTGGATGCTGCAGGTGAGTCCGAGGGAGGCGGTGGCGGTGAACTCCATCATGCAGCTGCACCGGGTCCTGGGGTCGGGGCCCGACCCGGTGGGTTCGGGCATTGAGACGGTGCTGGGTTGGATCCGGAGTTTGAACCCGAAGATCGTGACGGTTGTGGAACAGGAAGCCAACCACAACGGGGAGGGGTTTTTGGAGCGGTTCACGGAGGCGCTGCATTACTACTCGACCGTTTTTGACTCGATGGAGGCGTGTCCGGTCGAACCGGACAAGGCTTTGGCGGAGATGTACCTGCAGATGGAGATTTGCAACGTGGTGTGCTGCGAGGGACCGGCGCGGGTCGAGAGGCACGAGCCGCTGGCTAAGTGGAGGGACCGGCTCGGGAAAGCCGGGCTCAGGCCGTTGCATTTGGGCTCGAACGCTTTTAAGCAAGCCAGCATGTTGTTGACTCTGTTCTCGGCCGAGGGGTACTGCGTGGAAGAGACACAGGGGTGCTTGACTCTGGGGTGGCATAGCCGACCTCTGATTGCGGCTTCGGCTTGGCAAGCCGCGCCGATGCAAGACAGGGAAACGCTGCTTTTCGAGCAATGA 1488 0.6156 MVSSASNGSSSGSKTRDIDGDLAGVGYKVRSSELPQVAQNIERLENVFGNSSSDISQLASDTVMYNPSDIGSWLDTLLSEFDQTVSLPYDLSDLPDLAADQNPQPTLVTTVEEDSGIRLVHMLMTCADSVQRGDLPFAGSLIENMQGLLAHVNTNCGIGKVAGYFIDALRRRIFAQNVFLTTPYENDVLYHHYYEACPYLKFAHFTANQAILEAFNGHDCVHVIDFNLMQGLQWPALIQALALRPGGPPLLRLTGIGPPSPDDRDTLREIGLRLAELARSVNVRFAFRGVAAWRLEDVKPWMLQVSPREAVAVNSIMQLHRVLGSGPDPVGSGIETVLGWIRSLNPKIVTVVEQEANHNGEGFLERFTEALHYYSTVFDSMEACPVEPDKALAEMYLQMEICNVVCCEGPARVERHEPLAKWRDRLGKAGLRPLHLGSNAFKQASMLLTLFSAEGYCVEETQGCLTLGWHSRPLIAASAWQAAPMQDRETLLFEQ 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1945 495 Pfam Transcriptional regulator DELLA protein N terminal 19 84 IPR021914 -
Ssu1g1945 495 Pfam GRAS domain family 119 481 IPR005202 -
Ssu1g1945 495 Gene3D - 17 81 IPR038088 -
Ssu1g1945 495 ProSiteProfiles GRAS family profile. 110 481 IPR005202 -
Ssu1g1945 495 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 9 485 IPR005202 -
Ssu1g1945 495 SMART DELLA_2 20 96 - -
Ssu1g1945 495 PANTHER OS05G0574900 PROTEIN 9 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1945 Ssu-Chr1 54361282 54362769 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1945 18 481 GRAS Transcription Factor Family AT1G14920 49.119 4.09e-163 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu1g1945 GRAS 2.9e-122 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1945 K14494 - gmx:100805968 825.854