Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1938 ATGTCCACGGCCTCCACGACAAGGGACGAATCCTCCGACAACGACAGCACCTGCTCCTCCCTCACAGTGGCCGACTCCACCCGGAGCTGGCTGAGCACCTTCAGCTTCCGCCGtcgcagcagcagcagcagctcGCTCTCCCTTTGCGCCTCCAAGATCACCACCAAGGCTGCATGGGAGGCCATGCAACGGCTCCGCCTCGACACCGGCGGCGTCAGCCTCGACCACTTCCGGCTTCTGCGGCGGCTGGGCAGCGGCGACATCGGGAACGTGTACCTCTGCCAGATACGGAACCCAGGGGTGGGGTTGGCGCAGTGCCTCTACGCCATGAAGGTGGTGGACAGAGAGGCACTGGCCATAAAGAAGAAGCTGCACAGGGCTGAGATGGAGAAGGAGATTTTGGCAATGATGGATCACCCCTTCTTGCCTACTCTATACGCTGTGTTTGATGCCTCTCATTACTCTTGCTTCGTCATGGACTTTTGCCCCGGCGGAGACTTGTTCTCCGCTCGCCAACGCCAGCCAGGGAAACGCTTTACTATCTCATCCACTAAgTTTTATGCAGCTGAGACACTTGTAGCGCTGGAGTATCTCCACATGAGGGGCATAGTGTACAGGGATTTGAAGCCAGAGAATGTGCTGGTAAGGGAGGACGGGCACATTATGCTTTCAGATTTTGATCTGTGTCTCAAATGCGACGTCGTTCCCAAGCTGTTGAGAAGCAAAACCAGATCGGAACGCAGCGTCAGGACTCGAAGGAGTTCAGCGCCTTCTTGCGCTGCCCCCATGCAGCCTGTGCTGTCCTGTTTCTCTACCTCAagcaagagaaagaaagtgacAACAACACTTACAAGGGAAAATGTGGAAGAGTATGAACTTGACCCAGAGATAGTGGCAGAGCCCATCAATGCAAGGTCCAAGTCATTTGTGGGAACCCACGAGTACTTGGCACCTGAAGTGATTTCAGGGCAGGGGCATGGGAGTGCCGTGGATTGGTGGACTTTTGGAGTGTTCTTGTATGAGATGTTATATGGGAGAACACCCTTCAAAGGTGAGAACAACGAGAAAACACTCATAAACATTCTCAAGCAGCCCTTGGCTTTCCCTAGAGTTGCGGTTAGTAGTAGCAAGGAGTTTGAAGAGATGGCGAAGGTTCAAGGCCTCATCAGCAAGCTCTTGGTGAAGAATCCAAAGAAGAGAATTGGGTGCTGCATGGGCTCAGTTGAGATCAAGAGGCATGAATTCTTTAAGGGAGTGAATTGGGCTCTAATTAGATCGGTTAGGCCACCTGAAGTCCCTGCTGATGTGAACAAGATTAGGAGTAGAGTTTTGTTACAGAAACTAAGCAAGAAAGACAAGGATCAACCGTTTCAGATTACTCATCATTTTGACTACTTCTGA 1401 0.5054 MSTASTTRDESSDNDSTCSSLTVADSTRSWLSTFSFRRRSSSSSSLSLCASKITTKAAWEAMQRLRLDTGGVSLDHFRLLRRLGSGDIGNVYLCQIRNPGVGLAQCLYAMKVVDREALAIKKKLHRAEMEKEILAMMDHPFLPTLYAVFDASHYSCFVMDFCPGGDLFSARQRQPGKRFTISSTKFYAAETLVALEYLHMRGIVYRDLKPENVLVREDGHIMLSDFDLCLKCDVVPKLLRSKTRSERSVRTRRSSAPSCAAPMQPVLSCFSTSSKRKKVTTTLTRENVEEYELDPEIVAEPINARSKSFVGTHEYLAPEVISGQGHGSAVDWWTFGVFLYEMLYGRTPFKGENNEKTLINILKQPLAFPRVAVSSSKEFEEMAKVQGLISKLLVKNPKKRIGCCMGSVEIKRHEFFKGVNWALIRSVRPPEVPADVNKIRSRVLLQKLSKKDKDQPFQITHHFDYF 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1938 466 CDD STKc_phototropin_like 75 434 - -
Ssu1g1938 466 MobiDBLite consensus disorder prediction 1 20 - -
Ssu1g1938 466 SUPERFAMILY Protein kinase-like (PK-like) 60 437 IPR011009 -
Ssu1g1938 466 PANTHER FLIPPASE KINASE 1-RELATED 5 466 - -
Ssu1g1938 466 Gene3D Transferase(Phosphotransferase) domain 1 162 231 - -
Ssu1g1938 466 SMART serkin_6 77 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1938 466 PANTHER PROTEIN KINASE PINOID 2 5 466 - -
Ssu1g1938 466 Pfam Protein kinase domain 306 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1938 466 Pfam Protein kinase domain 78 232 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1938 466 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Ssu1g1938 466 Gene3D Transferase(Phosphotransferase) domain 1 304 434 - -
Ssu1g1938 466 Gene3D Phosphorylase Kinase; domain 1 75 161 - -
Ssu1g1938 466 ProSiteProfiles Protein kinase domain profile. 77 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1938 Ssu-Chr1 54091130 54093534 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1938 13 466 AGC Kinase Gene Family AT2G26700 57.006 0.0 558
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Ssu1g1938 Pkinase 5e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1938 K08286 - gmx:100787216 741.11