Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1933 ATGGGAACCTCTGCAAACGCTGTGGCTGGTGGTCGAGGCGCCACTGTCCCCAAAGATGTTGACTACGCTCAGTACTTCTGCACCTATGCTTTCCTCTACCACCAGAAGGAGATGCTCTCTGATCGCGTTCGCATGGACGCTTACTTCAACGCCATTTTTGAGAACAAACGCCACTTCGCTGGCAAGACTGTTTTGGATGTGGGGACTGGAAGTGGCATTCTTGCTATATGGTCAGCGCAAGCAGGTGCGAGGAAGGTGTATGCAGTGGAAGCTACAAAGATGTCAGAGCATGCACGTGCACTCATCAAAGCAAATAATCTGCAGGACGTAGTTGAGGTCATTGAGGGATCGATGGAGGATGTTACCTTGCCAGAGAaagTTGATGTGATCATCTCTGAGTGGATGGGTTATTTTCTTCTGCGTGAATCTATGTTTGATTCAGTTATACATGCTCGTGATCGCTGGCTCAAACCGACAGGAGTGATGTATCCTAGTCATGCTTGCATGTGGATGGCACCTATCAGGACTGGGATAGGAGATCACAAATTGGGTGATTACGAGTCGGCTATGGATGATTGGCACAACTTCGTTGATGAAACAAAAACCTACTATGGTGTTGATATGAGCACTTTAACGAAGCCTTTTTCAGAGGAGCAGAGGAAATACTATCTACAGACATCATTGTGGAGCAGCCTTCATCCGCACCAAGTTGTAGGAACTGCTGCTATAGTAAAGGAAATTGATTGTTTAACTGCCACAGTGACCGACATAGAGAAAGTTAGAtcaaatttttctttgtcaataaCCATGGAAAAGACAAAGTTGTGTGGATTCGGAGGGTGGTTTGATGTACATTTTCGAGGAAGAAGTGAGGATCCAGCTGAAAACAAGATTGAGTTAACTACAGCTCCCAGTGTAGATTACGGTACACACTGGGGCCAACAGGTATTTCTCTTGCATCCTCCTATGCATCTGAGTGAAGGTGATGATTTAAGGGTTTCTTTTCTAATGAGTCGCTCAAAGGAAAACCATCGTTTGATGGAGGTTGAACTTGGGTGTGAGATTCATCAGCATTCTGGCAAGCTACTTGCACCTTTCAAAAATAAGTACTACATTGAGTAA 1122 0.4447 MGTSANAVAGGRGATVPKDVDYAQYFCTYAFLYHQKEMLSDRVRMDAYFNAIFENKRHFAGKTVLDVGTGSGILAIWSAQAGARKVYAVEATKMSEHARALIKANNLQDVVEVIEGSMEDVTLPEKVDVIISEWMGYFLLRESMFDSVIHARDRWLKPTGVMYPSHACMWMAPIRTGIGDHKLGDYESAMDDWHNFVDETKTYYGVDMSTLTKPFSEEQRKYYLQTSLWSSLHPHQVVGTAAIVKEIDCLTATVTDIEKVRSNFSLSITMEKTKLCGFGGWFDVHFRGRSEDPAENKIELTTAPSVDYGTHWGQQVFLLHPPMHLSEGDDLRVSFLMSRSKENHRLMEVELGCEIHQHSGKLLAPFKNKYYIE 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1933 373 Gene3D Vaccinia Virus protein VP39 20 164 IPR029063 -
Ssu1g1933 373 CDD AdoMet_MTases 63 163 - -
Ssu1g1933 373 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE 12 361 IPR025799 GO:0016274|GO:0018216
Ssu1g1933 373 Gene3D - 166 373 - -
Ssu1g1933 373 Pfam Ribosomal protein L11 methyltransferase (PrmA) 60 133 - -
Ssu1g1933 373 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 29 357 IPR029063 -
Ssu1g1933 373 PANTHER PROTEIN ARGININE N-METHYLTRANSFERASE PRMT10 12 361 - -
Ssu1g1933 373 ProSiteProfiles SAM-dependent methyltransferase PRMT-type domain profile. 19 350 IPR025799 GO:0016274|GO:0018216
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1933 Ssu-Chr1 53851001 53862028 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1933 24 332 C2H2 Transcription Factor Family AT3G12270 32.432 2.51e-42 154
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1933 K11434 - gmx:100795134 725.317