Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1925 ATGTGTGTCCAATTGAGTGTCCTCATAGAGAGTTTTGAAGTCATCTTGCCACAAAGCACAAAGATTCTTGGTGAAGCTTTGTACCCACTTGTAGATGAGTTGGAACATGATGTTGCAACAAAGATTATAGGCCTACTTTTGGAGATGGACCAGCCTGAAGTATTGCATCTAATTGAGTCACCAGATGCCTTCATGGCTAAAGTTGTTGAAGCCATGAATGTCTTGAGAAATGTTGCTCAACCACAAGCCAACTGA 255 0.4157 MCVQLSVLIESFEVILPQSTKILGEALYPLVDELEHDVATKIIGLLLEMDQPEVLHLIESPDAFMAKVVEAMNVLRNVAQPQAN 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1925 84 SMART poly_2 15 78 IPR002004 GO:0003723
Ssu1g1925 84 Gene3D - 6 81 - -
Ssu1g1925 84 SUPERFAMILY PABC (PABP) domain 17 83 IPR036053 GO:0003723
Ssu1g1925 84 PANTHER POLYADENYLATE-BINDING PROTEIN 19 80 - -
Ssu1g1925 84 PANTHER RNA BINDING PROTEIN 19 80 - -
Ssu1g1925 84 Pfam Poly-adenylate binding protein, unique domain 18 75 IPR002004 GO:0003723
Ssu1g1925 84 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 3 80 IPR002004 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1925 Ssu-Chr1 53016583 53017795 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1925 18 83 Eukaryotic Initiation Factors Gene Family AT2G23350 62.121 1.17e-23 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1925 K13126 - gmx:100784442 104.375