Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1919 ATGGATGGGAACAAGGACGACGCGTTGAAATGTTTGAGAATCGGCAAAGAGGCGTTAGAAAACGGCGATCGCTCACGCGCTCTGAAGTTCGTGACGAAAGCGCGCCGCCTCGACCCCGCCCTCCCCGTAGACGATCTATTGTCCGCGATAGAGACGGACGCAGGGGATCCGCCCCCTGCTGCCCCCGCCGCCGCGGAGCCCACGAAGCCCCCTGATCAGCCTTCTATCCGCCGAAGGGCCGCCACCGCGGCCCCCGCGGGGTCCTCATCGGCCTCATCCTCTCCGGCCACGTACACCGAAGAGCAAATTTCAATTATCAGAGAGATTAAGAGGAAGAAAAACTTTTATGATATATTGGGATTGGAGAAAAGCTGCACTGTTGAGGATGTGAGGAAATCTTATAGGAAACTGTCTCTTAAGGTTCATCCCGACAAGAACAAAGCCCCTGGCGCCGAGGAAGCCTTCAAGGCCGTGTCGAAGGCGTTTCAGTGTCTTAGTAATGAAGAAAGTAGGAGGAAGTATGACATTTCTGGAGAGGATGAATCGGTTTATGAGCAGCGCGCAGCGAGGCCGGCGACCAGGGGCTATAATGGTTACTATGAGGCTGATATTGATGCTGAGGAGATATTTAGGAACTTCTTCTTTGGAGGAATGGCCCCTGCCGCTAATTTTGGAGGATTCAGTTTTGGACCAGGTGGTTTTAATGCTCACAGGCCTGCTGAACATGGTTCTGGTGGTTTTAATGTTCGCGCCTTAATTCAGTTGCTGCCGGTGCTgcttattttgcttataaactTTTTGCCTTCGTCAGATCCCTTGTACTCACTTTCGAAGAGTTATCCTTATGAACATCGGTTTACTACACCCAAGGgtgttaattattatgttaagtCTACAAAGTTTGCTCAGGAGTATCCGCTGCAAAGCGAGGAACGAGTGGCGGTGGAAGAAAGGGTTGAGAGGGAGTACTTCAGCATTCTCCGCCAGAACTGTCGTTTCGAGTTGCAGCGTCGCCAATGGGGGTATATCCGGGAAACGCCGCACTGTGATATGCTGCGGAAGTTTGAGGTGGCAAATTGA 1080 0.5056 MDGNKDDALKCLRIGKEALENGDRSRALKFVTKARRLDPALPVDDLLSAIETDAGDPPPAAPAAAEPTKPPDQPSIRRRAATAAPAGSSSASSSPATYTEEQISIIREIKRKKNFYDILGLEKSCTVEDVRKSYRKLSLKVHPDKNKAPGAEEAFKAVSKAFQCLSNEESRRKYDISGEDESVYEQRAARPATRGYNGYYEADIDAEEIFRNFFFGGMAPAANFGGFSFGPGGFNAHRPAEHGSGGFNVRALIQLLPVLLILLINFLPSSDPLYSLSKSYPYEHRFTTPKGVNYYVKSTKFAQEYPLQSEERVAVEERVEREYFSILRQNCRFELQRRQWGYIRETPHCDMLRKFEVAN 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1919 359 PRINTS DnaJ domain signature 134 149 IPR001623 -
Ssu1g1919 359 PRINTS DnaJ domain signature 150 170 IPR001623 -
Ssu1g1919 359 PRINTS DnaJ domain signature 116 134 IPR001623 -
Ssu1g1919 359 ProSiteProfiles dnaJ domain profile. 114 178 IPR001623 -
Ssu1g1919 359 PANTHER - 1 358 - -
Ssu1g1919 359 MobiDBLite consensus disorder prediction 85 100 - -
Ssu1g1919 359 PANTHER AT29763P-RELATED 1 358 - -
Ssu1g1919 359 Pfam DnaJ domain 114 175 IPR001623 -
Ssu1g1919 359 Pfam Domain of unknown function (DUF1977) 268 339 IPR015399 -
Ssu1g1919 359 Gene3D DnaJ domain 110 223 IPR036869 -
Ssu1g1919 359 CDD DnaJ 114 167 IPR001623 -
Ssu1g1919 359 SUPERFAMILY Chaperone J-domain 110 230 IPR036869 -
Ssu1g1919 359 MobiDBLite consensus disorder prediction 48 100 - -
Ssu1g1919 359 ProSitePatterns Nt-dnaJ domain signature. 155 174 IPR018253 -
Ssu1g1919 359 SMART dnaj_3 113 170 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1919 Ssu-Chr1 52776794 52777873 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1919 109 175 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 40.845 3.36e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1919 K09518 - gmx:100788812 554.288