Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1910 ATGAGCCACCACAATCCCAATCCCAACCCCGTTGTTGAAGATGAGGAATCACCGTTGGCGTTGCCACTGCTAGAAGGCAGAAAGAGAGATGAGGAAGCGTCAGGGTCCAAGCCAGAGTCAAAGGCATCGGTTAGTGGTTCCGTGTTCAATTTGTCAACTACGATCATCGGTGCCGGGATCATGGCCTTACCCGCGGCCATCAAAGTTGTCGGTGCGGCTGTGGGTGTCACTGCCATCCTCTTCCTCGCCTTCCTCACTCATACCTCTTTGGAGACTCTCCTCAGATTCAGCAGAGTTGCCAAGGCTTCCACCTACGCCCACCTCATGGGCGATGCTTTTGGGAGTTTTGGAACCTTGCTGTTTCACGTGTCTGTGCTTCTCAACAACTTTGGGATACTTGTTGTCTACGTCATCATAATTGGTGATGTGTTGTCCGGAACATCTTCAGGTGGAGTTCATCATTTTGGGGTACTCGAAGGCTGGTTTGGTCAATGCTGGTGGACTGCCCGTACTTTTGTTCTTCTTCTCGCAACCCTCTTCGTGTTTGCTCCATTGGGCTTCTTTAAGAGGATAGATTCATTGAGACATACTTCTGCCTTAGCAGTGGCTCTGGCTATTGTGTTTCTACTCATAACTGCAGGAATCACATTCATCAAATTGTTTAATGGCAGTATAGCTAGTCCGAGGTTGCTTCCTAATATTACTGATGTTACTTCCATATGGAATCTCTTTACAACAGTTCCAGTTTTTGTGACAGCATTTGTTTGTCACTACAATGTGCATACAATAGACAATGAGTTAGGAGACCCTTCCCTGATGCAACCAGTTCTACGTGCATCGCTGGTTCTGTGTTCTAGTATTTATATTCTTACAGCATTATTTGGATTTCTCCTATTTGGTGAGTCAACACTTGATGATGTGTTGGCCAACTTTGATACTGATCTGGGCATCCCGTATAGCAGTCTACTTAATGACATTGTTCGTATCAGCTATGCCCTCCACCTCATGCTTGTTTTCCCAGTTATCTTCTTCTCACTACGCTTCAATTTGGACGATCTTATCTTTCCTTCAGCTAGATCCTTGGATTTGGATAAGTGTAGGTTTGTCTTGATCACCACTGGACTTATTTCTTTAATCTATGTGGCTGCAAATTTTATACCTAGCATCTGGGATGCATTTCAATTCACTGGAGCAACTGCCACCGTTTGCCTCGGGTTTATTTTCCCTGCTGCAATTGCTCTTAGGGATCCCCATGGCATTGCAACAAAGAAGGACAAGATTTTATCCATTGTCATGATTTTTCTGGCTGTGTTCTCAAACGTTGTGGCTATATACAGTAATGTCGATGCTGGGTCAGAAAACATGTTGCTCCTCACCAATGAGTTACGTATTAGCATTAACAGAGGAGAGAGGTGTATTCCCAAGTCATTAAATTGA 1437 0.4468 MSHHNPNPNPVVEDEESPLALPLLEGRKRDEEASGSKPESKASVSGSVFNLSTTIIGAGIMALPAAIKVVGAAVGVTAILFLAFLTHTSLETLLRFSRVAKASTYAHLMGDAFGSFGTLLFHVSVLLNNFGILVVYVIIIGDVLSGTSSGGVHHFGVLEGWFGQCWWTARTFVLLLATLFVFAPLGFFKRIDSLRHTSALAVALAIVFLLITAGITFIKLFNGSIASPRLLPNITDVTSIWNLFTTVPVFVTAFVCHYNVHTIDNELGDPSLMQPVLRASLVLCSSIYILTALFGFLLFGESTLDDVLANFDTDLGIPYSSLLNDIVRISYALHLMLVFPVIFFSLRFNLDDLIFPSARSLDLDKCRFVLITTGLISLIYVAANFIPSIWDAFQFTGATATVCLGFIFPAAIALRDPHGIATKKDKILSIVMIFLAVFSNVVAIYSNVDAGSENMLLLTNELRISINRGERCIPKSLN 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1910 478 PANTHER TRANSMEMBRANE AMINO ACID TRANSPORTER FAMILY PROTEIN 19 450 - -
Ssu1g1910 478 MobiDBLite consensus disorder prediction 1 44 - -
Ssu1g1910 478 PANTHER AMINO ACID TRANSPORTER 19 450 - -
Ssu1g1910 478 MobiDBLite consensus disorder prediction 20 37 - -
Ssu1g1910 478 Pfam Transmembrane amino acid transporter protein 41 446 IPR013057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1910 Ssu-Chr1 52359502 52363261 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1910 6 450 Amino Acid or Auxin Permease AAAP Family AT3G30390 62.247 0.0 561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1910 K14207 - gmx:100778699 773.081