Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1904 atgACCATTTATGCCGTACAAGCCCAACTCAAAAACGGGTTTCACTACTCTTCATGCCCAAACGCAGAGGCCACGGTACGGTCCACTGTTGAATCCTACTTCAATAGAGACCCCACCATTGCTCCTGGCCTGCTCAGGCTTCATTTCCATGATTGCTTTGTCCAGGGCTGCGATGGTTCGGTTTTGATTGAAGGCTCTCTTGCAGAGCGGAATGCGCCGCCAAACCTTGGTCTAAGAGGTTTTGAAGTGATTGAGGATGCAAAATCACAACTCGAGACCATATGTCCTGGTGTTGTCTCATGCGCTGACATACTAGCATTGGCAGCACGTGATGCTGTCGACGTGGTACTAAATATATATCCAATCCCACCCTCAATCACACATAACAGACACATTCTCATTACTCTTTCCAAAGATTTATCATCCACCTCAAACTTGCCTTCTCCACTTGACCCTATTTCTGTCCAGAGGCAAAAATTTTCTGACAAAGGCCTAGATGACCACGACCTTGTCACCCTTGTTGGGGCACATACCATAGGCCAGACAGAATGCAGATTCTTCAGTTACCGCTTATATAATTTCACCACCACTGGCAATTCAGATCCAACTATAACCCAAGCTTTCTTAGCCCAAGCACTTTGTCCCAATAAAGGAAATGGCTTGAGAAGGGTGTCGTTGGACAAAGATAGTCCAGCCAAATTTGACGTTAGTTTCTTCAAAAATGTGCGTGATGGTAATGCTGTTCTAGAGTCAGACCAGAGGCTGTGGGGAGACCCTACTACACAAAGTGTGGTGCAGAATTACGCAGGGAATATAAGAGGGTTATTGGGGTTTAGATTTGATTATGAATTTCGAAAGGCTATGATTAAAATGAGTAGTATAGAGGTAAAGACTGGCACACAGGGAGAGATTAGAAAGGTGTgttcaaaaattaattga 939 0.4409 MTIYAVQAQLKNGFHYSSCPNAEATVRSTVESYFNRDPTIAPGLLRLHFHDCFVQGCDGSVLIEGSLAERNAPPNLGLRGFEVIEDAKSQLETICPGVVSCADILALAARDAVDVVLNIYPIPPSITHNRHILITLSKDLSSTSNLPSPLDPISVQRQKFSDKGLDDHDLVTLVGAHTIGQTECRFFSYRLYNFTTTGNSDPTITQAFLAQALCPNKGNGLRRVSLDKDSPAKFDVSFFKNVRDGNAVLESDQRLWGDPTTQSVVQNYAGNIRGLLGFRFDYEFRKAMIKMSSIEVKTGTQGEIRKVCSKIN 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1904 312 CDD secretory_peroxidase 9 311 IPR033905 GO:0004601|GO:0042744
Ssu1g1904 312 Gene3D - 13 312 - -
Ssu1g1904 312 ProSitePatterns Peroxidases proximal heme-ligand signature. 169 179 IPR019793 -
Ssu1g1904 312 PRINTS Plant peroxidase signature 286 299 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1904 312 PRINTS Plant peroxidase signature 79 92 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1904 312 PRINTS Plant peroxidase signature 19 38 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1904 312 PRINTS Plant peroxidase signature 241 258 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1904 312 PRINTS Plant peroxidase signature 225 240 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1904 312 PRINTS Plant peroxidase signature 43 63 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1904 312 PRINTS Plant peroxidase signature 98 108 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1904 312 SUPERFAMILY Heme-dependent peroxidases 9 312 IPR010255 GO:0004601|GO:0006979|GO:0020037
Ssu1g1904 312 ProSiteProfiles Plant heme peroxidase family profile. 9 312 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g1904 312 ProSitePatterns Peroxidases active site signature. 41 52 IPR019794 GO:0004601
Ssu1g1904 312 PRINTS Haem peroxidase superfamily signature 169 184 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g1904 312 PRINTS Haem peroxidase superfamily signature 227 242 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g1904 312 PRINTS Haem peroxidase superfamily signature 41 55 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g1904 312 PRINTS Haem peroxidase superfamily signature 99 116 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g1904 312 Pfam Peroxidase 26 270 IPR002016 GO:0004601|GO:0006979|GO:0020037
Ssu1g1904 312 PANTHER PEROXIDASE 25-RELATED 6 310 IPR000823 GO:0004601|GO:0006979|GO:0020037
Ssu1g1904 312 Gene3D Peroxidase, domain 2 147 291 - -
Ssu1g1904 312 PANTHER PEROXIDASE 6 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1904 Ssu-Chr1 52158207 52159727 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1904 10 312 Peroxidase AT2G41480 68.301 8.81e-153 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1904 K00430 - gmx:100806700 482.256
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1038 6 16969205 16971938 Ssu1g1904 1 52158207 52159727 PCT