Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1899 ATGATGGCTTTTAGGAATATCATGGAATTGGCCATTTTAACATTGGCAGTATGTGCTTCGTTGCAAAATGCATATGCAGAGAAAGTTCATATTGTTGGAGGCGAATTGGGATGGACAATTCCGCTCGGTGGCCCCATAGTTTATGATGCTTGGGCCTCATTGCAAGAATTCGATGTTGGAGACACTCTCTTGTTCAATTTCACAAATGGGGAACAAGATGTAGCAAGAGTCACAAACGAAGCCTACTTAATTTGCAACACTACGAACCCAATCTCCCTAAAGAAGACGGCCCCCGCAAATTTCACCTTGGATGCTGCTGGAGATTACTACTTCATTGGCACCTTGGACCAGCACTGCTTTAAGGGTCAAAAGCTAGCCATTCATGTACATGGCCTTGGTCATTCACCTAGTCCTGCTTCCAGTCCTAGAGGACCGTTCAACTACACAGCTGGTGACACGATGGGGTGGAGTGTGCCCCCTGGTGGTGAAATTGCATATGCCATATGGGCTCAATGGAAAAACTTTACACTTGGAGACAGTCTTGTTTTCTACTACCTTAATGGTACACAAGACGTTGCAGTGGTTACGAAGGAAGCTTACGAGAAGTGTGACACCAACCATACCCTTGCTGTCTATACAAATAGCCCAACCAGAATCATTCTTAACACAACTGGTGAGCATTTCTTCACAAGCACTTACCCCCATCACTGTGCCTTGGGACAGAAGCTAGCTATTAATGTCACTGGCAGTGGTTCCCCTGATACCGCCCTGTCTCCAGAAGGTTCTTTATTTCCCACTTCCCTTGGACCTTCAGCTTCAGCTCTTGCACCATTCAGCTCTGCCCCATCTATGCCTGTCTGCGGATACATGGTCACGCTCTTGTCCATTGGTTTGGCTTTCATCAGTTGA 909 0.4653 MMAFRNIMELAILTLAVCASLQNAYAEKVHIVGGELGWTIPLGGPIVYDAWASLQEFDVGDTLLFNFTNGEQDVARVTNEAYLICNTTNPISLKKTAPANFTLDAAGDYYFIGTLDQHCFKGQKLAIHVHGLGHSPSPASSPRGPFNYTAGDTMGWSVPPGGEIAYAIWAQWKNFTLGDSLVFYYLNGTQDVAVVTKEAYEKCDTNHTLAVYTNSPTRIILNTTGEHFFTSTYPHHCALGQKLAINVTGSGSPDTALSPEGSLFPTSLGPSASALAPFSSAPSMPVCGYMVTLLSIGLAFIS 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1899 302 SUPERFAMILY Cupredoxins 28 130 IPR008972 -
Ssu1g1899 302 Gene3D - 28 139 IPR008972 -
Ssu1g1899 302 Gene3D - 146 258 IPR008972 -
Ssu1g1899 302 PANTHER BLUE COPPER PROTEIN 147 271 IPR039391 GO:0009055
Ssu1g1899 302 CDD Phytocyanin 28 129 - -
Ssu1g1899 302 SUPERFAMILY Cupredoxins 146 247 IPR008972 -
Ssu1g1899 302 ProSiteProfiles Phytocyanin domain profile. 146 249 IPR003245 GO:0009055
Ssu1g1899 302 PANTHER EARLY NODULIN-LIKE PROTEIN 1 147 271 - -
Ssu1g1899 302 PANTHER EARLY NODULIN-LIKE PROTEIN 1 10 133 - -
Ssu1g1899 302 ProSiteProfiles Phytocyanin domain profile. 28 131 IPR003245 GO:0009055
Ssu1g1899 302 Pfam Plastocyanin-like domain 164 241 IPR003245 GO:0009055
Ssu1g1899 302 Pfam Plastocyanin-like domain 38 123 IPR003245 GO:0009055
Ssu1g1899 302 PANTHER BLUE COPPER PROTEIN 10 133 IPR039391 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1899 Ssu-Chr1 51549691 51551085 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1899 149 298 Phytocyanin Superfamily AT2G25060 37.748 8.71e-22 88.6