Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1895 ATGGCCCCTCTTTTGATTAAACTCACCTGCCTCCTCTTGCTTTTCTCCCTTTATATTTTGGCATTCTATTCCTTCTGTACTTGTCAACACTCTGAATTCAAAATCACTTCCACGATATTCTCTTCTCTCTCCAGCAATAACAAAACCATCATGGTGCAGACAAGGAAGTTCAGAGGTGTCAGGCAGCGCCATTGGGGTTCATGGGTATCGGAAATTCGCCACCCACTTCTCAAGAGGAGGGTGTGGCTGGGCACGTTTGAAACAGCGGAAGAAGCGGCACGAGCTTACGACCAAGCCGCCATATTGATGAGTGGGCGAAACGCGAAAACCAATTTCCCAATAGTCCAAACCCCGGAGGGTGACCCAAAGACGCTAACAACCCCCGACGAGACCCCATCAACCTCAAAGGAACTGGAAGAGATTCTTCACGCAAAGCTTCGAAAGTGTGGGAAGCTTCCGTCCCCTTCCATGACCTGCTTGAGGCTCGACCCGGAGAATTCCCACATTGGAGTGTGGCAAAAGCGCGCCGGCCAGCGTTCTGACTCCAACTGGGTAATGATGGTTCCGCTCGGAAAGAAGGGTGCCATTGAAGGTGGAGATAGTTCTATTGCTCCTTCTTCGTTTTCGGAGTGTGATCAGACCCAACAAGTCGCAAGGCAGGAGCTTGTGAGAACGGAGATGGATGAGGAGGAGAGAATTGCGCTGCAAATGATAGAAGAACTCCTCAGCAGGAACTGTCCCACTAGCCCTTCgtttaataacatatattaa 771 0.4955 MAPLLIKLTCLLLLFSLYILAFYSFCTCQHSEFKITSTIFSSLSSNNKTIMVQTRKFRGVRQRHWGSWVSEIRHPLLKRRVWLGTFETAEEAARAYDQAAILMSGRNAKTNFPIVQTPEGDPKTLTTPDETPSTSKELEEILHAKLRKCGKLPSPSMTCLRLDPENSHIGVWQKRAGQRSDSNWVMMVPLGKKGAIEGGDSSIAPSSFSECDQTQQVARQELVRTEMDEEERIALQMIEELLSRNCPTSPSFNNIY 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1895 256 PRINTS Ethylene responsive element binding protein signature 79 95 IPR001471 GO:0003700|GO:0006355
Ssu1g1895 256 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Ssu1g1895 256 MobiDBLite consensus disorder prediction 115 135 - -
Ssu1g1895 256 Pfam AP2 domain 56 104 IPR001471 GO:0003700|GO:0006355
Ssu1g1895 256 CDD AP2 56 115 IPR001471 GO:0003700|GO:0006355
Ssu1g1895 256 SUPERFAMILY DNA-binding domain 56 114 IPR016177 GO:0003677
Ssu1g1895 256 SMART rav1_2 56 119 IPR001471 GO:0003700|GO:0006355
Ssu1g1895 256 ProSiteProfiles AP2/ERF domain profile. 56 113 IPR001471 GO:0003700|GO:0006355
Ssu1g1895 256 PANTHER AP2-EREBP TRANSCRIPTION FACTOR 51 253 - -
Ssu1g1895 256 Gene3D AP2/ERF domain 55 115 IPR036955 GO:0003700|GO:0006355
Ssu1g1895 256 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 51 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1895 Ssu-Chr1 50808311 50810066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1895 51 245 AP2-EREBP Transcription Factor Family AT1G15360 58.454 4.58e-73 220
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Ssu1g1895 AP2 1.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1895 - - gmx:100779921 357.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1025 6 16749323 16750238 Ssu1g1895 1 50808311 50810066 PCT