Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1889 ATGTCAAGCTGCAGCATCTGCTACATTCCCTGCAACTTTTGCCACATTGTTCTTGCGGTGAGTGTTCCATGCAGTAACCTGTTTGACATCGTGACCGTTCGATGTGGGCACTGCACCAATTTATGGTCCGTGAACATGGCCGCAGCGTTTCAGTCACTGTCATGGCAAGATATCCTTGCTTTACACTTTCAGGCATCTGGTTACTCCAATCCGGGCTATAGAATTGACACTGGTTACAATTCTAAATGCAACAAGATACACATGCGTGCACCCACCACTTATGAAACTGCGGAAAGGGTGGTGAACCGGCAACGTCTTGCTTGTTTATTTATATGCAGAGAAGAGATTCAAAGGATCAAGGCCAATAATCTTGATATCAGTCACAGGGAAGCTTTCAGTACAGCTGCAAAGAACtGGGCACATTTCCCTCATGTTCATTTTGGGCTGATGCTAGAAAGCAACGATTAA 468 0.453 MSSCSICYIPCNFCHIVLAVSVPCSNLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDILALHFQASGYSNPGYRIDTGYNSKCNKIHMRAPTTYETAERVVNRQRLACLFICREEIQRIKANNLDISHREAFSTAAKNWAHFPHVHFGLMLESND 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1889 155 PANTHER PROTEIN YABBY 6-RELATED 4 154 IPR006780 GO:0007275
Ssu1g1889 155 Pfam YABBY protein 5 149 IPR006780 GO:0007275
Ssu1g1889 155 PANTHER AXIAL REGULATOR YABBY 5 4 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1889 Ssu-Chr1 50202525 50206744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1889 1 155 C2C2-YABBY Transcription Factor Family AT2G26580 62.577 3.93e-64 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Ssu1g1889 YABBY 1e-44 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1889 K25796 - gmx:100804731 239.965