Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1886 ATGGAATTGAAAAAGGGCAAGCTTGTCAGgTTCTACTCGGATGGCAAAAAGCATAAAGAACCACTGTGGGGAGCAACTGAGCCTCCAGCGCTTAAACCTAGCAATTTGCTACCATTAGGGAAAAATAGAATTACTGAAACATTTAAAATTGGAGGATCGAAGGTATTCCCTGAGGACCATGAGCCATGGCGTAAAAGAATTCTTGACCCGGGTAGCGAGATTGTGTTGAAATGGAACAGGGTTTTCATAGTTTCATGCTTGGTGGCTCTTTTTGTTGATCCGTTGTACTTTTATTTGCCTAGTGTGATAGAAAACACAGGGTCTTCATGTGTGAGGACAGACCTAACACTGCGGATTGTTGTGACCCTTCTTCGCACTATTGCGGATGTTTTTTATCTGTTGCACCTGATAATTAAGTTCAGGACAGCATATGTGGCACCAAGCTCGCGGGTATTTGGCAGAGGTGAACTTGTCATGGACCCAAAGAAGATTGCAAGGAGATATGTCAGATCGGATTTCTTCATTGATTTTATTGCCACACTCCCTCTACCTCAGaTGGTCATCTGGTTTATTATACCGGCAACAAGAAGCCCTCAAACTGATCACAAGAATAACGCGCTTGCATTGATTGTTTTGCTCCAATATATTCCaagattatatttgatttttccaTTAAGTTCTCAAATAATCAAAGCAACAGGAGTAGTTACGAAGACTGCTTGGGCAGGAGCTGCATATAATTTGCTGTTGTATATGTTAGCTAGCCATGTTTTAGGGGCAGCTTGGTATCTTCTATCTGTGGACCGATACACTACTTGTTGGAAATCCTTTTGCAAAAAGGAACATAATCCTGAAAATTGCTTTCTTTACCTAGACTGCAGTTCTTTGAATATTGAGCTGCGCAAGATATGGGCAAATAATACAGATGTGTTTAGCAGCTGTGATCCCAGTAATGATGATATCAGTTTCAAGTATGGAATATTTGAAAATGCAGTAAAGAAACATGTTGTCTCTTCAAACTTTATTCCAAAATACCTTTATTGTTTATGGTGGGGATTGCAGCAATTAAGTTCTTATGGGCAGAACCTAGAAACTAGCACTTTTATTGGAGAAACATCATTTGCTATTGTCATTGCCATCTTGGGTCttgtattattttctcatttgattGGGAACATGCAGACATATTTGCAATCAATTACTATAAGACTTGAGGAGTGGAGGCTTAAACGAAGAGACACAGAGGAGTGGATGAGGCATCGCCAACTTCCTGAAGATTTGAAAAGTTGTGTTAGACGATTTGTTCAATATAAATGGCTTGCTACTCGCGGAGTTGACGAGGAAACTATTCTACGTGCATTACCTGCTGATCTTCGCCGAGATATCCAACGCCACCTGTGCTTAGACCTTGTTAGACGAgttccctttttctCACAGATGGATGATCAGCTTCTGGATGCAATATGTGAGCGGCTGGTATCGTCTCTGAGCACTCAAGGCACCTACATTGTTTGTGAGGGTGACCCTGTGACTGAAATGCTTTTTATCATTAGAGGTAGACTGGATAGTTCTACTACAAATGGCGGCCGGACTGATTTCTTCAACTCAATCATATTGAGACCTGGAGATTTTTGTGGCGAGGAACTACTTTCATGGGCTTTACTCCCAAAATCAACCATTAATTTGCCTTCTTCAACTAGAACAGTTAAAGCACTAAGTGAGGTTGAAGCTTTTGCTCTTCGGGCTGAAGACCTCAAGTTTGTTGCTAATCAATTTAGGCGCCTCCACAGTAAGAAGCTGCAGCACACCTTTCGATTTTATTCCCACCACTGGAGGACTTGGGCAGCCTGCTTTATACAGGCTGCTTGGCGCCGATATAAGAAAAGGATGTCTGTGAAAGACCTCAGTTTGAGGGAATCCATTCCTTTAGATGAGACAGTAGCTAGTGAGAGAGAACATGAGGACTATTCTGCAGGTTCAAATTCATCTCAGGCTAAATTGAACCTTGGGGCCACAATTCTTGCTTCGAGATTTGCTGCTAACACACAAAGAGGAGCTCTGAAGATTAAAGATGACATGCCCCAGTTACAGAAGCCTGAAGAACCTGATTTTTCCACTGAAGCCAACGACGATTAG 2136 0.4106 MELKKGKLVRFYSDGKKHKEPLWGATEPPALKPSNLLPLGKNRITETFKIGGSKVFPEDHEPWRKRILDPGSEIVLKWNRVFIVSCLVALFVDPLYFYLPSVIENTGSSCVRTDLTLRIVVTLLRTIADVFYLLHLIIKFRTAYVAPSSRVFGRGELVMDPKKIARRYVRSDFFIDFIATLPLPQMVIWFIIPATRSPQTDHKNNALALIVLLQYIPRLYLIFPLSSQIIKATGVVTKTAWAGAAYNLLLYMLASHVLGAAWYLLSVDRYTTCWKSFCKKEHNPENCFLYLDCSSLNIELRKIWANNTDVFSSCDPSNDDISFKYGIFENAVKKHVVSSNFIPKYLYCLWWGLQQLSSYGQNLETSTFIGETSFAIVIAILGLVLFSHLIGNMQTYLQSITIRLEEWRLKRRDTEEWMRHRQLPEDLKSCVRRFVQYKWLATRGVDEETILRALPADLRRDIQRHLCLDLVRRVPFFSQMDDQLLDAICERLVSSLSTQGTYIVCEGDPVTEMLFIIRGRLDSSTTNGGRTDFFNSIILRPGDFCGEELLSWALLPKSTINLPSSTRTVKALSEVEAFALRAEDLKFVANQFRRLHSKKLQHTFRFYSHHWRTWAACFIQAAWRRYKKRMSVKDLSLRESIPLDETVASEREHEDYSAGSNSSQAKLNLGATILASRFAANTQRGALKIKDDMPQLQKPEEPDFSTEANDD 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1886 711 MobiDBLite consensus disorder prediction 689 711 - -
Ssu1g1886 711 ProSiteProfiles cAMP/cGMP binding motif profile. 476 606 IPR000595 -
Ssu1g1886 711 CDD CAP_ED 476 607 IPR000595 -
Ssu1g1886 711 Gene3D - 81 401 - -
Ssu1g1886 711 Pfam Ion transport protein 78 402 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Ssu1g1886 711 Gene3D Helix hairpin bin 404 467 - -
Ssu1g1886 711 Pfam Cyclic nucleotide-binding domain 499 587 IPR000595 -
Ssu1g1886 711 Gene3D Jelly Rolls 474 594 IPR014710 -
Ssu1g1886 711 SUPERFAMILY Voltage-gated potassium channels 72 398 - -
Ssu1g1886 711 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 14-RELATED 36 708 - -
Ssu1g1886 711 SMART cnmp_10 476 607 IPR000595 -
Ssu1g1886 711 PRINTS EAG/ELK/ERG potassium channel family signature 389 398 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu1g1886 711 PRINTS EAG/ELK/ERG potassium channel family signature 253 263 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu1g1886 711 PRINTS EAG/ELK/ERG potassium channel family signature 439 446 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu1g1886 711 PRINTS EAG/ELK/ERG potassium channel family signature 371 382 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu1g1886 711 PRINTS EAG/ELK/ERG potassium channel family signature 136 145 IPR003938 GO:0005249|GO:0006813|GO:0016020
Ssu1g1886 711 SUPERFAMILY cAMP-binding domain-like 406 598 IPR018490 -
Ssu1g1886 711 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 36 708 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1886 Ssu-Chr1 49879939 49892712 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1886 1 710 Ion Channels AT4G30360 69.093 0.0 1014
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1886 K05391 - gmx:100808425 1360.13