Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1885 ATGTTGATAACGGTTAGGGAagcttcctcttcttctccccTCAGTTTCTGGCTTAATCGTCTCAACGCAAAACCCTCTAAAACACTCAAAACATCCATTTGCCAAGCCAGTTTCTCAGTCCAAAGAAGACCCACTCATTCATGGAATACTGGGCACCTCTCTACCAGCAGTGAGGTAGCAAATTTTGATCCCTTGGGTATTAACTCAGATTTATCTTCTGCTCTGAATTCTACCTGGGAAAATCTGGTGTGCTCGTTCACACAAACATTTGAGAGTGCTTCAAGTACAGAAAAGGGAAAACCTAACTCTTCTCAAGGAGTAGCAGCTGCAATAGAGGATAGTTCAATAGATTTTGGTGACTTTTTTAAAGGTCCACTGCCAGGGAAGTTTCTCAAGCTTTTAGGGTTTCTTGCCTTGTCACGGCTTGGAGTGTACATACCCCTAGGTGGAGTTAATAGGGAGGCTTTTGTTGGAAATTTGGACGAGAACAGTTTATTAAGCACTTTGGACTCGTTTTCTGGTGGAGGTATTGGTAGACTTGGGGTATGCTCCCTTGGTATTGTTCCCTTCATCAATGCACAGATTGTTTTCCAGCTTCTTGCACAAATATATCCCAAATTGCAAGATCTTCAAAAGAGAGAAGGTGAGGCTGGAAGAAAGAAAGTTCTGCAGTACACTCGATATGCTTCAGTTGGATTTGCCATTGTACAGGCAATTGGCCAAGTTCTTTACCTACGTCCCTATGTCAATGACTTTTCTGTAGAGTGGGTTCTTTCTTCTGTTATCTTGTTGACTCTTGGCTCCATGTTTACAACATACATCGGTGAACGAATTACAGACCTAAAACTTGGGAATGGCACCTCTCTTTTGATATTCACAAACATTATCTCCTACTTGCCAGCTTCTTTTGGTAGGACAATTGCACAAGCATTTAATGATGCTAACTACATTGGACTTGCTACCATTATTGTGTCCTTCTTTTTGTTGGTAGTTGGTATTGTTTATGTTCAGGAAGCAGAGAGAAAAATCCCTCTTAACTATGCTTCTAGATTCACCAGCAGAAGCACTGGACTCGAAAAGTCTGCTTACCTACCCTTTAAGGTAAATAGTTCTGGAGTAATGCCAATCATTTTTTCTACATCATCATTAGCTCTTCCTGGTACTTTAGCACGCTTCACTGGTTTAACTGCACTAAAGAAGGCTGCAGTGGCATTAAATCCAGGAGCTGGATATTTGTTGTAG 1242 0.4058 MLITVREASSSSPLSFWLNRLNAKPSKTLKTSICQASFSVQRRPTHSWNTGHLSTSSEVANFDPLGINSDLSSALNSTWENLVCSFTQTFESASSTEKGKPNSSQGVAAAIEDSSIDFGDFFKGPLPGKFLKLLGFLALSRLGVYIPLGGVNREAFVGNLDENSLLSTLDSFSGGGIGRLGVCSLGIVPFINAQIVFQLLAQIYPKLQDLQKREGEAGRKKVLQYTRYASVGFAIVQAIGQVLYLRPYVNDFSVEWVLSSVILLTLGSMFTTYIGERITDLKLGNGTSLLIFTNIISYLPASFGRTIAQAFNDANYIGLATIIVSFFLLVVGIVYVQEAERKIPLNYASRFTSRSTGLEKSAYLPFKVNSSGVMPIIFSTSSLALPGTLARFTGLTALKKAAVALNPGAGYLL 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1885 413 PANTHER SECY/SEC61-ALPHA FAMILY MEMBER 48 411 IPR002208 GO:0015031|GO:0016020
Ssu1g1885 413 Pfam SecY 182 395 IPR002208 GO:0015031|GO:0016020
Ssu1g1885 413 ProSitePatterns Protein secY signature 1. 181 200 IPR030659 -
Ssu1g1885 413 PANTHER PREPROTEIN TRANSLOCASE SUBUNIT SCY1, CHLOROPLASTIC 48 411 - -
Ssu1g1885 413 Gene3D SecY subunit domain 121 412 IPR023201 -
Ssu1g1885 413 SUPERFAMILY Preprotein translocase SecY subunit 122 397 IPR023201 -
Ssu1g1885 413 PRINTS Preprotein translocase SecY subunit signature 130 148 - -
Ssu1g1885 413 PRINTS Preprotein translocase SecY subunit signature 222 245 - -
Ssu1g1885 413 PRINTS Preprotein translocase SecY subunit signature 280 303 - -
Ssu1g1885 413 PRINTS Preprotein translocase SecY subunit signature 371 390 - -
Ssu1g1885 413 PRINTS Preprotein translocase SecY subunit signature 180 200 - -
Ssu1g1885 413 PRINTS Preprotein translocase SecY subunit signature 254 279 - -
Ssu1g1885 413 ProSitePatterns Protein secY signature 2. 273 290 IPR030659 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1885 42 413 Chloroplast and Mitochondria Gene Families AT2G18710 78.515 0.0 597
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1885 K10956 - gmx:100810430 724.931