Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1884 ATGGCGAAGCAGCAAACACAGAAAATCAATGCAAGCACTAACAATAACCGTAACACAGCTAACACTGTCACCACCAAGGTGAAACGAACAAGGAGAAGTGTCCCTAGAGATTCCCCACCTCAACGCAGCTCAATATACAGAGGAGTCACCAGGCACCGATGGACAGGTCGATACGAAGCTCATTTGTGGGACAAGAATTGCTGGAATCAGTCACAGAACAAGAAAGGACGACAAGTCTACCTCGGTGCTTATGACGATGAAGAGGCCGCAGCACATGCTTACGATCTAGCAGCATTGAAATACTGGGGTCAAGATACCATTCTTAATTTCCCGTTATCGACCTACCAGAATGAACTGAAAGAAATGGAGGGTCAATCTAGGGAGGAGTATATTGGATCATTAAGGAGgAAAAGCAGCGGTTTTTCTCGTGGAGTTTCTAAATACAGAGGTGTTGCAAGACACCATCATAACGGAAGATGGGAGGCTCGGATTGGCAGGGTTTTTGGCAACAAATATCTTTACCTCGGAACTTATGCAACCCAAGAAGAAGCTGCCACAGCATATGACATGGCAGCTATTGAATATCGAGGACTCAATGCTGTTACAAATTTCGATCTCAGCCGCTATATCAAGTGGCTTAAGCCCAATcacaataataacataattaactCTAATCTTATTGACTCTATCCCTAATTGTGAGACCAACTTCACCCCAAACCCTAATCAAGAACAAGGATTCAATTTTTTCCGCAGTCAAGAATCATTCAATAATGAAGAAGCGACATCGACTCAGCCTCGTCCAGCTGCTGCCACATCAGCCCTAGGACTTTTGCTTCAGTCATCCAAGTTTAAGGAGATGATGGAGATGACATCTGCCGCAGATTTGTCCATACCGCCGCCGCCAGAGTCTGAGTTGCCGCCATGCACATTTCCCGATGACATTCAAACATACTTTGAGTGTGAAGATTCCAAAAGATATGGAGAAGAGGATGATATCATGTTCAGCGAGCTCAATAGCTTTGTTTCCCCTATGTTCCATTATGATGACTTTGAGGCTTGA 1062 0.4388 MAKQQTQKINASTNNNRNTANTVTTKVKRTRRSVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNCWNQSQNKKGRQVYLGAYDDEEAAAHAYDLAALKYWGQDTILNFPLSTYQNELKEMEGQSREEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPNHNNNIINSNLIDSIPNCETNFTPNPNQEQGFNFFRSQESFNNEEATSTQPRPAAATSALGLLLQSSKFKEMMEMTSAADLSIPPPPESELPPCTFPDDIQTYFECEDSKRYGEEDDIMFSELNSFVSPMFHYDDFEA 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1884 353 ProSiteProfiles AP2/ERF domain profile. 45 111 IPR001471 GO:0003700|GO:0006355
Ssu1g1884 353 SUPERFAMILY DNA-binding domain 146 207 IPR016177 GO:0003677
Ssu1g1884 353 SMART rav1_2 147 211 IPR001471 GO:0003700|GO:0006355
Ssu1g1884 353 SMART rav1_2 45 117 IPR001471 GO:0003700|GO:0006355
Ssu1g1884 353 CDD AP2 146 207 IPR001471 GO:0003700|GO:0006355
Ssu1g1884 353 ProSiteProfiles AP2/ERF domain profile. 147 205 IPR001471 GO:0003700|GO:0006355
Ssu1g1884 353 PANTHER AP2 DOMAIN-CONTAINING TRANSCRIPTION FACTOR 1 337 - -
Ssu1g1884 353 MobiDBLite consensus disorder prediction 1 28 - -
Ssu1g1884 353 Pfam AP2 domain 146 197 IPR001471 GO:0003700|GO:0006355
Ssu1g1884 353 Pfam AP2 domain 45 103 IPR001471 GO:0003700|GO:0006355
Ssu1g1884 353 Gene3D AP2/ERF domain 146 207 IPR036955 GO:0003700|GO:0006355
Ssu1g1884 353 Gene3D AP2/ERF domain 45 113 IPR036955 GO:0003700|GO:0006355
Ssu1g1884 353 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Ssu1g1884 353 PRINTS Ethylene responsive element binding protein signature 187 207 IPR001471 GO:0003700|GO:0006355
Ssu1g1884 353 SUPERFAMILY DNA-binding domain 44 113 IPR016177 GO:0003677
Ssu1g1884 353 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 337 - -
Ssu1g1884 353 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1884 Ssu-Chr1 49738302 49740845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1884 41 209 AP2-EREBP Transcription Factor Family AT5G57390 72.781 1.47e-89 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Ssu1g1884 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1884 K09285 - gmx:100795869 602.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0831 6 13412656 13415243 Ssu1g1884 1 49738302 49740845 PCT