Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1876 ATGTTAATGCATGCAATTATGGGTTTGCTTCCATTTTCAATGgttctatttctctttataaCCATTGTTCATTCAGGAGTTTATGGGGAGGAAAACCTGACCCTAGTGAATGAAAAAGAGTCACTTGTTTCATTCATGTCAGGCATTGTTTCTGATCCCAAAAACGTTCTAAAAAGTTGGAAGTCCCCTGGTGTACATGTTTGCAATTGGTATGGGGTCAGATGCAACAATGCAAGTGACAGGATCGTAGAGCTTGCTCTTAATGGAAGCTCACTAGGGGGCACTATTTCCCCTGCTCTTGCTAACCTCTCTTACTTGCAAATTCTTGATCTTTCTGAGAATTTCTTTGTGGGCCACATTCCCAAACAACTAGGCTATTTGATTCAGCTTCAACAACTCAGTTTATCTGGGAATTTTCTTCAAGGGAAAATTCCCTCTGAGTTGGGCTCATTTCACAACTTGTACTACCTTAACATGGGAAGCAATCAGCTTGAGGGTGAGATTCCACCCTCACTTTTTTGCAATGGGTCTTCCACATTGAGGTATATAGACCTCTCTAACAATTCCTTGGGAGGACAAATACCCTTGAGCAATGAGTGTATCCTGAAAGAGCTTAGGTTCCTCTTACTTTGGTCTAACAAATTTGTAGGCCATGTTCCTTCAGCTCTTTCAAACTCCACAGAACTAAAATGGCTAGACTTGGAATCAAATAGGTTGAGTGGGGAGTTACCATCTGAAATTGTAAGTAATTGGCCACAACTACAATTCCTCTACCTATCATATAATGACTTTGTTAGCCATGATGGTAACACCAAACTCGAacctttcttctcttccttgATGAATTTGTCTAGCATGCAAGGCCTCGAATTGGCAGGAAACAATCTTGGAGGGAAGTTACCTCATAATATTGGTGATCTTCCTACTAGCCTGTTACAACTTCACCTAGAAGACAATCTCATACATGGTTCTATACCTCCAAACATTGCAAACCTTGTCGATCTGACTCTTTTAAACTTTTCCAGCAACTTGCTAAATGGATCAATACCTCCCAGCCTCTGCCAGATGGGGAGACTAGAGAGAGTTTATTTGTCAAATAATTCACTATCTGGGGAGATTCCTTCAACCCTTGGTGGCAGTCAGCATCTGGGGCTTCTTGACTTGTCAATAAACAAGCTTTCTGGCTCAATACCAGACACTTTTGCTAACCTCACTCAGTTAAGAAGGCTTTTAGTTTATGACAACCAGCTTTCTGGAACCATCCCACCAAGTCTGGGAAAATGTGTTAATTTGGAGATTTTGGACCTATCCCACAACAAGATTTCAGGGCTGATCCCTAAGGAAGTTGCGGCCTTGACTAGCTTGAAGCTATACTTGAATTTATCAAGTAATAACTTAGATGGGCCTTTACCATTGGAGCTCTCGAAAATGGACATGGTGCTGGCTATTGACCTATCCTTGAACCATCTCTCTGGCAGAATCCCACCACAGCTTGAAAGTTGCATAGCAATAGAGTACCTCAACCTTTCTGGTAACTCCTTAGAAGGACCTCTCCCGGATTCATTATGCAAATTGCCCTATATTCAAGCACTTGACGTGTCTTCAAATCAATTGACAGGGGTAATACCAGAGTCCCTTCAGTTGTCCACTCTCAAGGtacttaatttctctttcaacaAATTCTCAGGGAGTGTCTCAAACAAGGGAGCCTTTTCATCTTTGACCATAGACTCTTTCCTTGGAAATGATGGTCTCTGTGGCTCGGTCAAAGGCATGAAAAACTGCCACAAGAAACGACGGTATCATTTGGTTCTTCTACTAATTCCAGTTTTTCTATTTGGCACCCCCCTTCTGTGCATGCTGGGGTACCCCAcaataaaaaagtcaaaagaaaGAATGCAATTGGCAATAGTTAGCAAAGGGGATTTTGAGGATGAAGATGAGGAAACAAAGGAGCTCAAGTACCCAAGAATTTCATATAGACAACTTATTGAAGCCACAGGAGGCTTTAGTGCTTCAAGCCTAATTGGTTCGGGTCGGTTTGGACAGGTCTACAAAGGAGTTCTCCGAGATAACACAAGAATAGCAGTGAAGGTGTTAGAGACATCAACAGCTGGTGAGATTTCAGGGAGCTTTAGAAGGGAATGCCAAATCCTGAAGAGGACTAGGCACAgaaatttaataagaatcatAACAATTTGCAGCAAAAAAGCGTTCAAGGCTCTTGTTCTTCCGCTGATGCCAAATGGTAGCCTTGAGAGGCACTTATATCCGAGCCATGGGTTGAGCCAAAGGTTGGACATGGTTCAGTTGGTGAGGATCTGCAGCGATGTAGCTGAAGGAATGGCCTATTTACACCACTATTCTCCAGTTAGGGTAGTGCACTGTGATCTTAAGCCGAGCAATATACTACTTGATGACGATTTGACAGCTTTGGTAACTGATTTTGGTATTGCAAAGCTTGTAAAAGGTGACGACAACATGCCCACAAGTGATTCATCTTTCAGTTCAACACATGGCTTGTTATGTGGCTCCGTTGGCTACATAGCTCCTGaatATGGAATGGGAAAACATGCATCAACTCAGGGTGATGTTTACAGTTTTGGTGTACTTTTGCTAGAAATGGTGACAGGTAGACGCCCAACAGATGTCCTTGTCCATGAAGGGTCTTGTTTACATGAGTGGGTTAAGAGACAATATCCACACGAGCTTGGTAACATTGTTGAACAAGCATTGCAAAGATGCTCTCCCTCTGGCATGCCTAgtcactatcacaaaattgggCAAGATGTTATGTTGGAACTCATAGAGTTGGGGCTTCTGTGCACATACCACAATCCTTCAACAAGACCAAGCATGCTGGATGTAGCCCAAGAAATGGGGAGGTTGAAGGACTACCTTTCTCACATATCATCTTCTCGGCTGATTGAAGATAAATTTAGCCAGAAAACACATAACTAA 2961 0.4117 MLMHAIMGLLPFSMVLFLFITIVHSGVYGEENLTLVNEKESLVSFMSGIVSDPKNVLKSWKSPGVHVCNWYGVRCNNASDRIVELALNGSSLGGTISPALANLSYLQILDLSENFFVGHIPKQLGYLIQLQQLSLSGNFLQGKIPSELGSFHNLYYLNMGSNQLEGEIPPSLFCNGSSTLRYIDLSNNSLGGQIPLSNECILKELRFLLLWSNKFVGHVPSALSNSTELKWLDLESNRLSGELPSEIVSNWPQLQFLYLSYNDFVSHDGNTKLEPFFSSLMNLSSMQGLELAGNNLGGKLPHNIGDLPTSLLQLHLEDNLIHGSIPPNIANLVDLTLLNFSSNLLNGSIPPSLCQMGRLERVYLSNNSLSGEIPSTLGGSQHLGLLDLSINKLSGSIPDTFANLTQLRRLLVYDNQLSGTIPPSLGKCVNLEILDLSHNKISGLIPKEVAALTSLKLYLNLSSNNLDGPLPLELSKMDMVLAIDLSLNHLSGRIPPQLESCIAIEYLNLSGNSLEGPLPDSLCKLPYIQALDVSSNQLTGVIPESLQLSTLKVLNFSFNKFSGSVSNKGAFSSLTIDSFLGNDGLCGSVKGMKNCHKKRRYHLVLLLIPVFLFGTPLLCMLGYPTIKKSKERMQLAIVSKGDFEDEDEETKELKYPRISYRQLIEATGGFSASSLIGSGRFGQVYKGVLRDNTRIAVKVLETSTAGEISGSFRRECQILKRTRHRNLIRIITICSKKAFKALVLPLMPNGSLERHLYPSHGLSQRLDMVQLVRICSDVAEGMAYLHHYSPVRVVHCDLKPSNILLDDDLTALVTDFGIAKLVKGDDNMPTSDSSFSSTHGLLCGSVGYIAPEYGMGKHASTQGDVYSFGVLLLEMVTGRRPTDVLVHEGSCLHEWVKRQYPHELGNIVEQALQRCSPSGMPSHYHKIGQDVMLELIELGLLCTYHNPSTRPSMLDVAQEMGRLKDYLSHISSSRLIEDKFSQKTHN 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1876 986 PANTHER LEUCINE-RICH RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN 28 964 - -
Ssu1g1876 986 Gene3D Transferase(Phosphotransferase) domain 1 747 980 - -
Ssu1g1876 986 Gene3D Ribonuclease Inhibitor 179 598 IPR032675 -
Ssu1g1876 986 SUPERFAMILY L domain-like 37 267 - -
Ssu1g1876 986 ProSiteProfiles Protein kinase domain profile. 670 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1876 986 SMART LRR_typ_2 151 175 IPR003591 -
Ssu1g1876 986 SMART LRR_typ_2 227 250 IPR003591 -
Ssu1g1876 986 SMART LRR_typ_2 404 428 IPR003591 -
Ssu1g1876 986 SMART LRR_typ_2 202 226 IPR003591 -
Ssu1g1876 986 SMART LRR_typ_2 356 380 IPR003591 -
Ssu1g1876 986 SMART LRR_typ_2 525 548 IPR003591 -
Ssu1g1876 986 SMART LRR_typ_2 283 307 IPR003591 -
Ssu1g1876 986 SMART LRR_typ_2 429 451 IPR003591 -
Ssu1g1876 986 SMART LRR_typ_2 127 150 IPR003591 -
Ssu1g1876 986 Pfam Leucine rich repeat N-terminal domain 38 76 IPR013210 -
Ssu1g1876 986 Pfam Leucine rich repeat 358 417 IPR001611 GO:0005515
Ssu1g1876 986 Pfam Leucine rich repeat 204 264 IPR001611 GO:0005515
Ssu1g1876 986 Gene3D Phosphorylase Kinase; domain 1 641 745 - -
Ssu1g1876 986 Pfam Leucine Rich Repeat 505 525 IPR001611 GO:0005515
Ssu1g1876 986 Pfam Leucine Rich Repeat 430 448 IPR001611 GO:0005515
Ssu1g1876 986 Pfam Protein kinase domain 672 955 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1876 986 ProSitePatterns Protein kinases ATP-binding region signature. 676 698 IPR017441 GO:0005524
Ssu1g1876 986 ProSiteProfiles Leucine-rich repeat profile. 430 451 IPR001611 GO:0005515
Ssu1g1876 986 SUPERFAMILY L domain-like 335 587 - -
Ssu1g1876 986 PRINTS Leucine-rich repeat signature 525 538 - -
Ssu1g1876 986 PRINTS Leucine-rich repeat signature 431 444 - -
Ssu1g1876 986 SUPERFAMILY Protein kinase-like (PK-like) 651 958 IPR011009 -
Ssu1g1876 986 Gene3D Ribonuclease Inhibitor 34 178 IPR032675 -
Ssu1g1876 986 SMART serkin_6 670 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1876 986 ProSitePatterns Serine/Threonine protein kinases active-site signature. 793 805 IPR008271 GO:0004672|GO:0006468
Ssu1g1876 986 PANTHER OS04G0122200 PROTEIN 28 964 - -
Ssu1g1876 986 CDD STKc_IRAK 676 963 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1876 Ssu-Chr1 49026095 49029420 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1876 15 965 Receptor kinase-like Gene Family AT3G47110 34.708 1.87e-160 497
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Ssu1g1876 Pkinase 3.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1876 - - lang:109346572 1484.54