Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1872 ATGAAAGTCCCCAGTGTATGTGTTTCGGAACCCAATCTGTTTGAAAActactctctttctttcttcctctcctCCAACATTTTTTCCCTCCAAACTTATTTTCTGTTCCCTTATGTCAGTGGCAACACAGATGTAGTAATACCTGTGACATCTACTCGCTATAGCATAAATGCTCTGAAGCTTCCTACCGTTAGTCCTTGGCGTGCATGGTATGATGATGGGGAGGTAGGAGGATGGACCCAAGAATATGCTGGCCTTACGTTTGTGGCCGTAAGGGGTGCGGGGCACGAAGTTCCTTTGCATAGACCAAAACTTGCTCTAACACTGTTCAAAGCCTTCTTAGCAGGAACATCAATGCCCAACCTTGAACTAGTCAGTGCCTCCTGA 387 0.4289 MKVPSVCVSEPNLFENYSLSFFLSSNIFSLQTYFLFPYVSGNTDVVIPVTSTRYSINALKLPTVSPWRAWYDDGEVGGWTQEYAGLTFVAVRGAGHEVPLHRPKLALTLFKAFLAGTSMPNLELVSAS 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1872 128 ProSitePatterns Serine carboxypeptidases, histidine active site. 86 103 IPR033124 GO:0004185
Ssu1g1872 128 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 39 122 IPR001563 GO:0004185|GO:0006508
Ssu1g1872 128 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 29 39 122 - -
Ssu1g1872 128 SUPERFAMILY alpha/beta-Hydrolases 38 121 IPR029058 -
Ssu1g1872 128 Pfam Serine carboxypeptidase 39 115 IPR001563 GO:0004185|GO:0006508
Ssu1g1872 128 Gene3D - 24 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1872 Ssu-Chr1 48914340 48914861 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1872 40 119 Calmodulin-binding Proteins AT2G22960 27.160 1.73e-09 51.6