Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1869 ATGGATATGTACATTCGTGTTAAACGTAGTAAGACAACATACTTCATCCAGTGCAAGCCATCTGATAAAATTCTTGACATAAAGCAGAAGTTGCAAGAACTTGTTGATCAGCCAGCTAATAATCAACGGTTGATTCTGCCTGGTTCAGGGGAAGTATTAGAAGACTCTAAGACTCTGGCAGATCAAAAGGTTGAAAATGATGCCGTTGTTGCACTGACCTTGAGAAAAgATGATAATGAATTTGAGGAGGTCAACATTGTCCGGCCAAATGATTTCTACCAAGCACGGGATGCGGATGGTGCCAGTTGGTAA 312 0.4103 MDMYIRVKRSKTTYFIQCKPSDKILDIKQKLQELVDQPANNQRLILPGSGEVLEDSKTLADQKVENDAVVALTLRKDDNEFEEVNIVRPNDFYQARDADGASW 103
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1869 103 PANTHER OS03G0364000 PROTEIN 1 100 - -
Ssu1g1869 103 Pfam Ubiquitin family 5 76 IPR000626 GO:0005515
Ssu1g1869 103 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Ssu1g1869 103 CDD Ubl_ubiquitin_like 5 72 - -
Ssu1g1869 103 SMART ubq_7 3 75 IPR000626 GO:0005515
Ssu1g1869 103 Gene3D - 1 92 - -
Ssu1g1869 103 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1869 1 75 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 33.333 5.38e-07 43.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1869 K03873 - gmx:100499885 200.675