Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1866 ATGGAAGCTAGTACTGGGCTTTTTGCTGGTACTCCAAACAGCAATGAGCTTGTGGTCATCCAAGGACACGATGAGCCTAAGCCTGTGAAGAACTTAGATGGTCAGCTCTGTGAGATATGTGGCGATTCTGTGGGACTCACGGTGGATGGAGAATTATTTGTAGCTTGTGAAGAATGTGGTTTCCCTGTGTGCAGGCCATGCTATGAGTATGAAAGAAGGGAGGGGACTCAAGTTTGTCCTCAGTGTCATACAAGATACAAGCGTATCAAAGGAAGCCCAAGAGTGGAGggagatgaagatgaagatgatgtCGATGATATTGAACATGAATTCAAGCATGAAGAGATACAGCTAGGGAAGATGATCCATGGAGATGATGATGGGAATTCTAAATCAAAACCGGTAGGTTTAGCAAAGGTGAATGGAGAGCTGCCCATAGCTTCTCACAGTGTGGGAGATCCTGGTGCAAAATTCGATGACAAGGAGAAAACAGATGACTGGAAGTTACACCAAGGCAATCTATGGCCTGAAACTGATGCCTCAGTTGATCCTGAAAAGGCCATGAAAGATGAAACGAGACAGCCACTGTCAAGGAAAGTACCAATACCATCAGGCAAACTCAGTCCTTACAGAATGATGGTTGTGGCTCGGCTCCtccttttattacttttctttgaGTACAGAATCTTCCACCCAGTACCTGATGCAATTGGATTATGGTTCATATCTGTGACATGTGAAATCTGGCTTGCATTATCCTGGATGATTGATCAGCTTCCCAAATGGTTCCCCATTGCTCGCGAGACGTATCTTGATCGTCTTTCAATCAGGTTTGAACCGGAGAACAAGCCCAGTATGCTTTCTCCAATAGATATCTTTGTCACTACCGCGGATCCAATCAAGGAACCTCCTCTAGTTACAGCCAACACTGTTCTTTCAATCTTGGCCTTGGATTACCCTGCTGATAAAATCTCATGCTACGTTTCTGATGATGGAGCTTCCATGCTCACCTTTGAAGCTCTTCAAGAAACTGCTGAATTTGCTAGAAAGTGGGTACCTTTCTGCAAAAAATTCTCTGTAGAACCTAGAGCACCAGAGAAGTACTTCTCTGAGAAGATAGATTTTCTAAAGGATAAGCTTCAATCCACTTATGTAAAAGAACGCCGTACTATGAAGAGAGAATATGAAGAATTTAAGGTGAGGATAAATGCACTTGTGGCTAAATCCATGAGAGTTCCCCCAGAAGGGTGGACTATGAAAGATGAGACACCATGGCCTGGGAACAACCCCAAAGACCATCCAAGTATGATACAAGTCCTTCTTCCTCACAATGGAGGTAATGAACTTCCCTGTCTTGTCTACACATCTCGTGAGAAAAGACCGGCATTTCAACACCACAGCAAAGCCGGGGCAATCAACGCCTTGCTTCGCGTATCGGCAGTCTTAAGCAATGCTCCTTTTGTGCTCAACTTGGATTGCAATCACTATGTGAACAACAGAAAAGTCGTGCGAGAGGCCATGTGTTTCTTCATGGACATACAACTTGGGAATGGCATTGGCTTTGTCCAGTTTCCACTAAGATTTGACAGCCTCGATAGGAATGATCGTTATGCCAACAAAAACACTGTTTTATTTGATATTAACTTGAGGTGCCTAGATGGAATTCAGGGACCTGCTTATGTTGGTTCAGGATGTATCTTCAGAAGGAAAGCGTTAACTGGCTTTGATCCTCCAAAGGCTTCAAAACGCCCAAGAATGGTGCAAGTACACTCAAAACAGGATGAGAATGGAGAAGAAACAAGCATAACAGCAGCAACAGATGAGGACAAAGAGCTATTGAAGTCACGGatgaatgatgaaaataaatttgggaAGTCCACACTTTTCATGAACTCGTCCTTAACAGAAGAAGGTGGGGTTGATCCTTCTTCGAGTCAGGAAGCCCTGCTtaaagaagccattcatgtcaTGAGTTCTAGATATGAAGACAGAACTCTCTGGGGATATGAGGTGGGTTTGAGCTATGGATCTATAGCAGCAGATACTCTGACAAGTTTGAAGATGCATTGTCGTGGTTGGAGGTCTGTATATTGCATGCCAAAGAGAGATCCATTCAGGGGTACAGCTCCTATCAACCTCACAGATAGACTCAACCAGGTGCTGAGATGGGCAGTGGGATCACTTCAGATCCTATTCAGCGGTCATTGCCCACTTTTGTATGGCCTCAATGGAGGAAGACTCAAGGGACTCCAAAGGATTGCCTATATTAACAGCACTGTCTACCCCTTCAGCTCAATACCCCTCCTAGTATACTGTATCATTCCTGCCATCTGCTTGCTGACTGATAAATTCATCACACCATCGGTAGGCACTTTTGCAAGTCTAATCTTCATTGCATTGTTCATCTCAATCTTTGCCTCGGCAATTCTTGAATTGAGATGGAGTAGAGTTAGCCTTGAGGAATGGTGGAGAAGCCAGCAATTCTGGGTCATTGGCAGTGTGTCTGCAAACCTCTTTGCCGTTGCGCAAGGCATTATGGGAGCCCTGCCACTGGGCAGAGTCAACACAAACTTCAGCATTGTATCAAAGGCACCAGATGATGTAGAGTTTCGTGAACTATATGCAATTAGATGGACTGCACTTCTAATACCTCCAACCACCATCATAATAATCAACCTCATTGGTGTTGTGGCTGGCTTCACAGATGCCATAAACAGTGGTGAACATTCTTGGGGAGCCCTGCTTGGGAAACTCTTCTTCTCTGTATGGGTTATTGTCCATTTGTACCCTTTCCTTAAAGGTCTAATGGGTAGGCAGAACAGAACACCAACTCTTATTGTCATATGGTCTGTGCTCTTGGCTTCTATCTTCTCCTTGGTTTGGGTGAGAATTGACCCTTTTGTGTTGAAAACAAAGGGGCCTGATGTCAAGCAATGTGGAATTAGTTGCTGA 2952 0.4333 MEASTGLFAGTPNSNELVVIQGHDEPKPVKNLDGQLCEICGDSVGLTVDGELFVACEECGFPVCRPCYEYERREGTQVCPQCHTRYKRIKGSPRVEGDEDEDDVDDIEHEFKHEEIQLGKMIHGDDDGNSKSKPVGLAKVNGELPIASHSVGDPGAKFDDKEKTDDWKLHQGNLWPETDASVDPEKAMKDETRQPLSRKVPIPSGKLSPYRMMVVARLLLLLLFFEYRIFHPVPDAIGLWFISVTCEIWLALSWMIDQLPKWFPIARETYLDRLSIRFEPENKPSMLSPIDIFVTTADPIKEPPLVTANTVLSILALDYPADKISCYVSDDGASMLTFEALQETAEFARKWVPFCKKFSVEPRAPEKYFSEKIDFLKDKLQSTYVKERRTMKREYEEFKVRINALVAKSMRVPPEGWTMKDETPWPGNNPKDHPSMIQVLLPHNGGNELPCLVYTSREKRPAFQHHSKAGAINALLRVSAVLSNAPFVLNLDCNHYVNNRKVVREAMCFFMDIQLGNGIGFVQFPLRFDSLDRNDRYANKNTVLFDINLRCLDGIQGPAYVGSGCIFRRKALTGFDPPKASKRPRMVQVHSKQDENGEETSITAATDEDKELLKSRMNDENKFGKSTLFMNSSLTEEGGVDPSSSQEALLKEAIHVMSSRYEDRTLWGYEVGLSYGSIAADTLTSLKMHCRGWRSVYCMPKRDPFRGTAPINLTDRLNQVLRWAVGSLQILFSGHCPLLYGLNGGRLKGLQRIAYINSTVYPFSSIPLLVYCIIPAICLLTDKFITPSVGTFASLIFIALFISIFASAILELRWSRVSLEEWWRSQQFWVIGSVSANLFAVAQGIMGALPLGRVNTNFSIVSKAPDDVEFRELYAIRWTALLIPPTTIIIINLIGVVAGFTDAINSGEHSWGALLGKLFFSVWVIVHLYPFLKGLMGRQNRTPTLIVIWSVLLASIFSLVWVRIDPFVLKTKGPDVKQCGISC 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1866 983 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 443 577 IPR029044 -
Ssu1g1866 983 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 279 386 IPR029044 -
Ssu1g1866 983 Pfam Cellulose synthase 290 977 IPR005150 GO:0016020|GO:0016760|GO:0030244
Ssu1g1866 983 SUPERFAMILY RING/U-box 21 107 - -
Ssu1g1866 983 MobiDBLite consensus disorder prediction 182 196 - -
Ssu1g1866 983 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Ssu1g1866 983 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 983 - -
Ssu1g1866 983 PANTHER CELLULOSE SYNTHASE 1 983 - -
Ssu1g1866 983 MobiDBLite consensus disorder prediction 587 610 - -
Ssu1g1866 983 SUPERFAMILY Nucleotide-diphospho-sugar transferases 303 796 IPR029044 -
Ssu1g1866 983 MobiDBLite consensus disorder prediction 177 197 - -
Ssu1g1866 983 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Ssu1g1866 983 MobiDBLite consensus disorder prediction 577 610 - -
Ssu1g1866 983 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Ssu1g1866 983 Coils Coil 388 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1866 Ssu-Chr1 48509424 48515323 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1866 1 983 Cell Wall Biosynthesis AT5G17420 64.985 0.0 1377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1866 K10999 - gmx:100777270 1817.36