Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1865 ATGGAAGCCAGCGCTGGACTGGTCGCTGGGTCTCATAACCGTAACGAGCTAGTTGTCATTCATGGCCATGAAGAGCCCAAGCCTTTGAAGAACTTGGATGGCCAAGTGTGTGAGATTTGTGGTGATGGCGTGGGACTCACGGTGGATGGAGACCTCTTTGTGGCTTGCAATGAGTGTGGTTTTCCAGTGTGCAGGCCTTGCTATGAGTATGAAAGGAGAGAAGGGAGCCAGCTTTGCCCACAGTGCAAGACCAGATACAAGCGTCTCAAAGGGAGTCCGCGGGTGGAGGGagatgatgatgaggaggaCGTGGATGATATTGAGCATGAGTTCAATATTGATGACCAAAAAAACAAGCATGGCCATGCTGCAGAAGCAATGCTTCACGGGAAGATGAGCTACGGAAGAGGTCCTGAAGATGATGAGAATTCCCAGTTCCCAACACCTGTCATTGCTGGTGGTCGTTCTAGGCCTGTAAGTGGGGAGTTCCCAATATCATCTAATGGTTATGGGGAGCAGATGTTATCTTCTTCACTGCATAAACGAGTGCATCCATATCCGGTGTCTGAACCTGGAAGTGCAAGATGGGATGAAAAGAAAGAGGATGGATGGAAAGATAGAATGGATGACTGGAAATTGCAGCAAGGCAATTTAGGGCCTGAACCTGATGAAGATCCTGATGCAGCCATGTTAGATGAAGCAAGACAACCACTGTCAAGGAAAGTACCAATAGCATCTAGCAAAATCAATCCATACAGGATGGTGATTGTGGGACGCCTTGTCATTCTTGCTTTCTTCCTCAGATACAGACTTCTGAACCCTGTACATGATGCAATGGGGCTGTGGCTAACCTCTATCATATGTGAAATCTGGTTTGCTTTTTCATGGATTCTGGATCAGTTTCCCAAATGGTTTCCCATTGATAGAGAGACCTACCTTGACCGTCTTTCCATCAGGTATGAGCGTGAAGGTGAACCCAACATGCTTGCTCCTGTAGATGTCTTTGTTAGTACTGTGGATCCCATGAAGGAACCTCCTCTGGTTACAGCAAACACTGTTCTTTCAATCTTGGCCATGGATTACCCGGTTGATAAGATATCATGCTACATTTCTGATGATGGAGCCTCAATGTGTACATTTGAGTCCCTTTCAGAAACCGCAGAGTTCGCTAGGAAGTGGGTACCATTTTGTAAGAAATTTTCTATTGAACCTCGGGCACCTGAGATGTATTTCAGTGAGAAGATTGACTACCTAAAGGACAAAGTACAGCCCACCTTTGTTAAGGAGCGTCGAGCCATGAAGAGGGAATACGAAGAGTTTAAGGTTAGGATCAATGCACTTGTTGCAAAGGCCCAGAAAGTTCCTCAGGGAGGATGGATCATGCAGGATGGGACACCATGGCCAGGGAACAACACCAAGGATCACCCTGGTATGATTCAAGTGTTTCTTGGTAGCAGTGGAGGTCTTGATACTGAAGGAAACCAGCTTCCTCGCCTTGTTTATGTTTCCAGAGAGAAAAGGCCTGGTTTTCAACACCACAAGAAAGCTGGTGCCATGAATGCTCTGGTTCGGGTATCTGCTGTTCTCACAAATGCTCCTTTCATGCTGAACTTGGATTGTGATCACTACGTCAATAACAGCAAGGCTGCCCGAGAGGCCATGTGCTTCTTGATGGACCCCCAAACCGGGAAGAAGGTCTGCTATGTCCAGTTTCCTCAAAGATTTGATGGTATTGATACACATGATCGTTATGCCAACAGGAACACAGTTTTCTTTGATATTAACATGAAGGGTCTAGACGGTATTCAAGGTCCTGTATATGTGGGGACTGGATGTGTTTTTAGGAGGCAAGCTTTGTATGGCTATAATCCCCCCAAGGGTCCCAAGCGTCCAAAAATGGTAAGCTGTGACTGCTGCCCATGTTTTGGAAGCCGCAAGAAGTATAAGCAGAAGAGTGATGGAAATGGAGAGGCTGCAAGCCTTAAAGGGATGGATGATGAGAAAGAGGTACTGATGTCCCAGATGAATTTTGAGAAGAAATTTGGGCAGTCCTCTATTTTTGTGACTTCTACCTTGATGGAAGAGGGTGGTGTACCTCCTTCTTCAAGTCCAGCTGCCCTGCTtaaagaagccattcatgtgaTCAGCTGTGGATATGAAGATAAAACTGAATGGGGACTTGAGCTTGGTTGGATCTATGGATCTATCACAGAAGATATTCTAACAGGTTTTAAGATGCATTGCCGTGGGTGGAGGTCCATTTACTGCATGCCAAAGAGAGCTGCATTCAAGGGTACTGCTCCAATCAACTTGTCAGATCGTCTCAACCAGGTGCTTCGTTGGGCACTTGGTTCCATTGAGATTTTCTTCAGTCACCATTGCCCTCTATGGTACGGTTTCAAGGAAAAGAAGCTAAAGTGGCTCGAGAGATTTGCCTATGCAAACACAACTGTGTATCCATTCACCTCCATTCCTCTAGTCGCCTACTGTATTCTTCCTGCAATTTGCTTACTCACTGACAAATTCATCATGCCACCGATAAGCACCTTTGCTGGTTTGTACTTTGTTGCTCTCTTTTCTTCAATCATTGCAACTGGTATTCTTGAGTTGAAATGGAGTGGAGTGAGCATTGAGGAATGGTGGAGGAATGAGCAGTTCTGGGTCATTGGTGGTGTATCAGCTCACCTCTTTGCTGTGATACAAGGTCTACTAAAGGTTCTGGCTGGAATTGACACCAACTTCACTGTTACATCCAAGGCAGCAGATGATGAAGACTTTGGAGAATTATACACCTTTAAGTGGACTACTCTTTTAATTCCTCCAACCACTATCTTGATCATTAACATTGTTGGTGTTGTTGCTGGAATCTCAGATGCCATAAACAATGGCTACCAATCCTGGGGACCACTGTTTGGAAagctcttcttttctttctggGTAATTGTCCATCTGTATCCATTCCTTAAAGGTTTGATGGGTCGGCAAAACCGCACACCCACCATTGTTGTAATTTGGTCAGTGCTATTGGCTTCTATTTTCTCCTTGCTGTGGGTAAGAATTGACCCATTTGTCCTCAAGACCAAGGGACCTGATACCAAGCTATGTGGAATCAACTGCTAA 3120 0.4474 MEASAGLVAGSHNRNELVVIHGHEEPKPLKNLDGQVCEICGDGVGLTVDGDLFVACNECGFPVCRPCYEYERREGSQLCPQCKTRYKRLKGSPRVEGDDDEEDVDDIEHEFNIDDQKNKHGHAAEAMLHGKMSYGRGPEDDENSQFPTPVIAGGRSRPVSGEFPISSNGYGEQMLSSSLHKRVHPYPVSEPGSARWDEKKEDGWKDRMDDWKLQQGNLGPEPDEDPDAAMLDEARQPLSRKVPIASSKINPYRMVIVGRLVILAFFLRYRLLNPVHDAMGLWLTSIICEIWFAFSWILDQFPKWFPIDRETYLDRLSIRYEREGEPNMLAPVDVFVSTVDPMKEPPLVTANTVLSILAMDYPVDKISCYISDDGASMCTFESLSETAEFARKWVPFCKKFSIEPRAPEMYFSEKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKVPQGGWIMQDGTPWPGNNTKDHPGMIQVFLGSSGGLDTEGNQLPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYVNNSKAAREAMCFLMDPQTGKKVCYVQFPQRFDGIDTHDRYANRNTVFFDINMKGLDGIQGPVYVGTGCVFRRQALYGYNPPKGPKRPKMVSCDCCPCFGSRKKYKQKSDGNGEAASLKGMDDEKEVLMSQMNFEKKFGQSSIFVTSTLMEEGGVPPSSSPAALLKEAIHVISCGYEDKTEWGLELGWIYGSITEDILTGFKMHCRGWRSIYCMPKRAAFKGTAPINLSDRLNQVLRWALGSIEIFFSHHCPLWYGFKEKKLKWLERFAYANTTVYPFTSIPLVAYCILPAICLLTDKFIMPPISTFAGLYFVALFSSIIATGILELKWSGVSIEEWWRNEQFWVIGGVSAHLFAVIQGLLKVLAGIDTNFTVTSKAADDEDFGELYTFKWTTLLIPPTTILIINIVGVVAGISDAINNGYQSWGPLFGKLFFSFWVIVHLYPFLKGLMGRQNRTPTIVVIWSVLLASIFSLLWVRIDPFVLKTKGPDTKLCGINC 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1865 1039 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 20 110 IPR013083 -
Ssu1g1865 1039 MobiDBLite consensus disorder prediction 135 170 - -
Ssu1g1865 1039 SUPERFAMILY RING/U-box 21 107 - -
Ssu1g1865 1039 CDD mRING-HC-C4C4_CesA_plant 35 85 - -
Ssu1g1865 1039 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 485 623 IPR029044 -
Ssu1g1865 1039 Pfam Zinc-binding RING-finger 27 104 IPR027934 -
Ssu1g1865 1039 ProSiteProfiles Zinc finger RING-type profile. 37 83 IPR001841 -
Ssu1g1865 1039 Coils Coil 430 450 - -
Ssu1g1865 1039 PANTHER CELLULOSE SYNTHASE A CATALYTIC SUBUNIT 7 [UDP-FORMING] 1 1039 - -
Ssu1g1865 1039 Pfam Cellulose synthase 332 1033 IPR005150 GO:0016020|GO:0016760|GO:0030244
Ssu1g1865 1039 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 1 1039 - -
Ssu1g1865 1039 SUPERFAMILY Nucleotide-diphospho-sugar transferases 345 839 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1865 Ssu-Chr1 48361793 48367134 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1865 1 1039 Cell Wall Biosynthesis AT5G17420 86.263 0.0 1853
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1865 K10999 - gmx:100815436 2112.04