Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1863 ATGCAGCAAGGTGATCCAACGGTCCTAAGCTTGAGGCCTGGTGGTGGTCGTGGCGGCGGAAGCAGGCTTTTCGCTCATTCCTCCCCCTCTCCCGCTCCCTCCGCCGATCTCCCTCTTGCGCGCCCCCATGCCACTTTCTCTCTCAAGACTGGAGATTCACGGTTTGAGGGTCGTGAGTGTGTGCGATATACCAGAGATCAGCTTTTGCAGCTTAGAGAGGCTGTTGAGGTCCCTGATGATATTCTAAAGATTAAACAAGATATAGAAGCTGAACTTTTTGGTGAAGATCAAAGTTGGGGCCGTGCTGAAAGCAATCTTCCTCATCAATTACAAAATCGGTATTCTGAGCCAGATAACCGTGATTGGCGTGGTCGTTCTGGACAACATCCTGCCAATCCAGATGAGAGGTCATGGGAAAACCTCAGAGATAACAGGGAGTTTGGTAATAGATTTGACAATAGAGAGCAGGATGCTAGTCAGGTTAATCGCCAAGACCAACTCAATTCCCAGTTTGCAAGGACACAAATCTCTTCTACCCAAGGGGGAGGACCTACTCCTACGCTAGTCAAGGCTGAGGTTCCATGGTCAGCTAGAAGGGGAAGTCTCTCTGAAAAGGATCGTGTCTTAAAGACTGTGAAAGGAATACTGAATAAATTGACTCCTGAGAAATTTGATGTCCTGAAGGGTCAGTTAATTGATTCTGGCATTACATCAGCTGACATCTTGAAGGATGtcatttcacttatttttgatAAGGCTGTTCTAGAGCCAACATTTTGCCCCATGTATGCTCAGCTGTGTTCTGATCTTAATGAAAAGCTGCCTCCATTCCCATCTGAAGAACCTGGTGGGAAAGAAATCACCTTTAAGAGAGTACTCTTGAATAATTGCCAGGAGGCATTTGAAGGTGCTGATAATCTGAGGGAGGAAGTAAAAAAGATGACTGCCTCTGAGCAGGAGATGGAGCGTATGGACAAGGAAAGACTGATCAAGCTTCGTACTCTTGGAAATATACGTTTAATTGGTGAGCTATTGAAGCAGAAGATGGTTCCCGAAAAGATTGTCCATCACATTGTTCAGGAGCTTTTAGGATCCCCAGACAGCAAGTCTTGTCCAGTTGAGGAAAATGTTGAAGCCATATGTCAGTTTTTCAATACTATTGGCAAGCAGCTTGATGAAAGTCCTAAATCGCGGCGTATAAATGATATTTACTTTAGCCGATTGAAAGAACTGAGCACAAACCAACAACTTGTACCCCGGCTTAGGTTCATGATTCGGGGTGTTCTAGAGTTGCGTGCTAATAACTGGGTTCCTAGACGTGAAGAGGTCAAAGCCAAAACCATTACTGAAATTCATTCTGAGGCAGAAAAAAATCTTGGTTTGCGGCCAGGTGCCACTGCAAGTATTAGAAATACCCGTGGCGGTGTTCAAGGAAATGCCAGCTCTGGGGGCTTCCCTATTGCTCGACCTGGTATAGGGGGTTTGATGCCTGGAATGCCAGGGTCCAGGAAGATGCCTGGGATGCCTGGATTTGATAATGACAACTGGGAGATGCCTAAGACTAGATCTATGCCAAGAGGAGACTTGTCAGGTGTTCAAGCTGCTGGACGCAGTAACTCTTCTTTACTCTCCAAGTCCACAACCCTTAATTCAAAATTGCTACCTCAAGGTAGTGGTGGTATTATAAGTGCGAGAAATAGTGCCCTAGTACATGGCGGTGGTACAATTTCTACTCGCCCGACAAACTTTGGTTTAGGTCCTGAGGCAGCACCTCAACTCTCTTCACCTGCTAAAACAGCTGCTCCTGTTCCCATGTCCTCTGAGAAGCCACAAGTTCCAGCTGCAAGATTGAATCTTGATGATCTTCGCCGCAGAACTGTCTCTCTTCTAGAAGAATATTTCAGTGTTAGGCTTTTGGAAGAGGCATTACAGTGTGTGGAGGAATTAAAATCTCCTTCTTACCACTCTGAGGTTGTTAAGGAAGCCATTTCCCTTGCACTTGATAAAAGTCCGCCTTGTGTTGAGCCTGTTGCCAATCTAATCGAGTATCTGTATATTAAGAAGATTCTTACCGCTATAGACATAGGGACTGGCTGTTTGTTATTTGGTTCTCTGCTGGATGATATTGGTATAGATTTACCTAAAGCACCAAGTAATTTTGGTGAGATAATTGGGAAACTAATTTTGGCTGGGGGGTTGGATTTTAAGGTGGTGAGAGAGATTCTCAAGAAGGTGGAAGATGACTTGTTCCAGAGAGCAATATTTGACAGTGCGGTAGAGGCCATTGGATATGCATCTGGGCAAGCTGTGTTGGATTCACAAACATCTGATATTGAGGCTTGCCAGCGTCTGCTCAAGTGA 2361 0.4511 MQQGDPTVLSLRPGGGRGGGSRLFAHSSPSPAPSADLPLARPHATFSLKTGDSRFEGRECVRYTRDQLLQLREAVEVPDDILKIKQDIEAELFGEDQSWGRAESNLPHQLQNRYSEPDNRDWRGRSGQHPANPDERSWENLRDNREFGNRFDNREQDASQVNRQDQLNSQFARTQISSTQGGGPTPTLVKAEVPWSARRGSLSEKDRVLKTVKGILNKLTPEKFDVLKGQLIDSGITSADILKDVISLIFDKAVLEPTFCPMYAQLCSDLNEKLPPFPSEEPGGKEITFKRVLLNNCQEAFEGADNLREEVKKMTASEQEMERMDKERLIKLRTLGNIRLIGELLKQKMVPEKIVHHIVQELLGSPDSKSCPVEENVEAICQFFNTIGKQLDESPKSRRINDIYFSRLKELSTNQQLVPRLRFMIRGVLELRANNWVPRREEVKAKTITEIHSEAEKNLGLRPGATASIRNTRGGVQGNASSGGFPIARPGIGGLMPGMPGSRKMPGMPGFDNDNWEMPKTRSMPRGDLSGVQAAGRSNSSLLSKSTTLNSKLLPQGSGGIISARNSALVHGGGTISTRPTNFGLGPEAAPQLSSPAKTAAPVPMSSEKPQVPAARLNLDDLRRRTVSLLEEYFSVRLLEEALQCVEELKSPSYHSEVVKEAISLALDKSPPCVEPVANLIEYLYIKKILTAIDIGTGCLLFGSLLDDIGIDLPKAPSNFGEIIGKLILAGGLDFKVVREILKKVEDDLFQRAIFDSAVEAIGYASGQAVLDSQTSDIEACQRLLK 786
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1863 786 SUPERFAMILY ARM repeat 617 759 IPR016024 -
Ssu1g1863 786 SUPERFAMILY ARM repeat 203 438 IPR016024 -
Ssu1g1863 786 Gene3D - 615 780 - -
Ssu1g1863 786 Coils Coil 304 327 - -
Ssu1g1863 786 SMART ma3_7 622 734 IPR003891 -
Ssu1g1863 786 Gene3D - 200 436 - -
Ssu1g1863 786 SMART if4_15 209 435 IPR003890 GO:0003723|GO:0005515
Ssu1g1863 786 PANTHER MIF4G DOMAIN-CONTAINING PROTEIN / MA3 DOMAIN-CONTAINING PROTEIN ISOFORM 2 3 785 - -
Ssu1g1863 786 MobiDBLite consensus disorder prediction 99 140 - -
Ssu1g1863 786 ProSiteProfiles MI domain profile. 621 743 IPR003891 -
Ssu1g1863 786 MobiDBLite consensus disorder prediction 114 140 - -
Ssu1g1863 786 Pfam MA3 domain 622 734 IPR003891 -
Ssu1g1863 786 Pfam MIF4G domain 209 435 IPR003890 GO:0003723|GO:0005515
Ssu1g1863 786 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 3 785 IPR045208 GO:0003743
Ssu1g1863 786 MobiDBLite consensus disorder prediction 589 612 - -
Ssu1g1863 786 MobiDBLite consensus disorder prediction 1 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1863 Ssu-Chr1 48310576 48316523 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1863 1 784 Eukaryotic Initiation Factors Gene Family AT5G57870 62.889 0.0 956
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1863 K03260 - gmx:100800438 1355.12