Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1861 ATGCCCACTCGCTGTGAAATATGCTGCGAGATCATGATAGCTATCTTATTGCCTCCATTGGGAGTTTACTTCCGCCATGGATGCTGCAGTGTTGAGTTCATCATCTGTTTGCTTCTGACCATACTGGGGTATATTCCAGGAATAATTTATGCCCTCTATGCTATTGTGTTTATTGATCGTGATCAATATTTTGATGAATATAGGCGTCCCCTGTATGCAGCATAA 225 0.4178 MPTRCEICCEIMIAILLPPLGVYFRHGCCSVEFIICLLLTILGYIPGIIYALYAIVFIDRDQYFDEYRRPLYAA 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1861 74 PANTHER BNAA03G50460D PROTEIN 1 74 - -
Ssu1g1861 74 PANTHER HYDROPHOBIC PROTEIN RCI2 LOW TEMPERATURE AND SALT RESPONSIVE PROTEIN LTI6 -RELATED 1 74 IPR000612 GO:0016021
Ssu1g1861 74 Pfam Proteolipid membrane potential modulator 8 56 IPR000612 GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1861 Ssu-Chr1 48069046 48069995 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1861 1 74 RCI2 Gene Family AT4G28088 77.027 4.27e-39 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1861 - - gmx:100306426 152.91