LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu1g1858	ATGGCATCTCAAACCAAGGCCCataatctcttcttcttcttcctgtGCTTATTGATCTTGTCAAATTTTTCTTGCATTGCTGCTGCTGTGCCAAAAGAGCAAGAGCAAGATCGAATCTCTTCTCTCCCGGGGCAGCCACCAGTAAAATTTTCTCAGTTCTCTGGTTATGTCACTGTCAACGAGCAACATGGTCGAGCACTCTTCTACTGGTTCACTGAGGCCACCACTTTCCCCAAGAATAAACCTCTTGTTCTCTGGCTCAATGGAGGGCCTGGTTGCTCATCGGTGGCATACGGAGCATCAGAGGAAATTGGACCATTCCGTATAAACAAAACTGGCTCTTCTCTATACCTTAACAAATATGCATGGAATAGAGAAGCAAATATCCTCTTTCTTGAATCGCCTGCTGGTGTTGGTTTCTCATACACAAATACCAGTTCTGACCTCAAAACTTCTGGGGACAAAAGGACAGCTCAGGATGCTCTGATTTTTCTAATAAGATGGATGGCAAGATTTCcacaatataaatatagagaGTTTTACATTGCTGGGGAGAGCTATGCAGGGCATTATGTCCCCCAGTTGGCTAAGGAAGTCCacgattataataaaaataatcctcATATCCTTAATCTTAAAGGATTCATGGTGGGAAATGCTGTGACTGATGACCACTATGATGGGGTTGGAACTGTCACGTATTGGTGGAGCCACTCTATAATAtctgatcaatcatacaaaactATTCTCAAATACTGTAATTTCtcagaaaagaaaacaactaaGAAATGTGACGATGCAGTGAGTTATGCGGTTAACACTGAATTTGGAAACATTGATCAGTACAGTATCTATACCCCTACGTGCACAACATCACAGAATGATACTGTGAGGCAATATGTTAGGTTCAAGAGTACAATTTTACATACGATTTCTGGGTATGATCCGTGCACTGAAAATTATGCAGAGAAATATTATAATCGTCGTGATGTGCAGAAAGCATTGCATGCAAATGTTACAAACATTCCTTACAAATGGACTGCTTGCAGTGATTTGCTCAATAAACATTGGAAGGATTCTGAATTTTCTATGTTGCCCATTTACAAAGAGTTAATTGCAGCGGGTCTGAGAATCTGGGTTTTCAGTGGAGACACAGATTCAGTGGTTCCAGTAACTGCCACTAGGTTTTCTCTCAGCCATCTCAACCTCTCCATCAAAACTCGTTGGTATCCGTGGTACTCAAGTGGCCAGGTAGGTGGATGGGCAGAAGTATATGATGGACTGACTTTTGCAACAGTGAGAGGAGCTGGGCATGAAGTACCATTGTTTCAGCCGAAGCGAGCTTACATACTCTTCAGGTCCTTTTTGGCAGGCAAAGAGTTACCAAAATCCTGA	1395	0.3986	MASQTKAHNLFFFFLCLLILSNFSCIAAAVPKEQEQDRISSLPGQPPVKFSQFSGYVTVNEQHGRALFYWFTEATTFPKNKPLVLWLNGGPGCSSVAYGASEEIGPFRINKTGSSLYLNKYAWNREANILFLESPAGVGFSYTNTSSDLKTSGDKRTAQDALIFLIRWMARFPQYKYREFYIAGESYAGHYVPQLAKEVHDYNKNNPHILNLKGFMVGNAVTDDHYDGVGTVTYWWSHSIISDQSYKTILKYCNFSEKKTTKKCDDAVSYAVNTEFGNIDQYSIYTPTCTTSQNDTVRQYVRFKSTILHTISGYDPCTENYAEKYYNRRDVQKALHANVTNIPYKWTACSDLLNKHWKDSEFSMLPIYKELIAAGLRIWVFSGDTDSVVPVTATRFSLSHLNLSIKTRWYPWYSSGQVGGWAEVYDGLTFATVRGAGHEVPLFQPKRAYILFRSFLAGKELPKS	464

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu1g1858	464	Gene3D	-	364	458	-	-
	Ssu1g1858	464	Pfam	Serine carboxypeptidase	43	457	IPR001563	GO:0004185\|GO:0006508
	Ssu1g1858	464	Gene3D	-	317	354	-	-
	Ssu1g1858	464	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	19	463	IPR001563	GO:0004185\|GO:0006508
	Ssu1g1858	464	SUPERFAMILY	alpha/beta-Hydrolases	34	461	IPR029058	-
	Ssu1g1858	464	PRINTS	Carboxypeptidase C serine protease (S10) family signature	132	142	IPR001563	GO:0004185\|GO:0006508
	Ssu1g1858	464	PRINTS	Carboxypeptidase C serine protease (S10) family signature	168	193	IPR001563	GO:0004185\|GO:0006508
	Ssu1g1858	464	PRINTS	Carboxypeptidase C serine protease (S10) family signature	428	441	IPR001563	GO:0004185\|GO:0006508
	Ssu1g1858	464	PRINTS	Carboxypeptidase C serine protease (S10) family signature	119	131	IPR001563	GO:0004185\|GO:0006508
	Ssu1g1858	464	ProSitePatterns	Serine carboxypeptidases, histidine active site.	428	445	IPR033124	GO:0004185
	Ssu1g1858	464	Gene3D	alpha/beta hydrolase	33	291	IPR029058	-
	Ssu1g1858	464	PANTHER	SERINE CARBOXYPEPTIDASE 24	19	463	-	-
	Ssu1g1858	464	ProSitePatterns	Serine carboxypeptidases, serine active site.	182	189	IPR018202	GO:0004185

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu1g1858	Ssu-Chr1	47804518	47819448	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu1g1858	322	461	Calmodulin-binding Proteins	AT2G22960	31.206	5.65e-16	74.3

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu1g1858	K16297		-	gmx:100785391	813.913