Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1853 ATGTTTGACTGTGGTTACAAGTCACAATATGTGGGTGGGCAGCGGGAAAAATTTGTGAGgTTGGATGACTTGGATTCTAGACTATCTTCATCTTCTGAAGCTGCGGTTAAAACATCTGGATTTAGTATTGATAAATTAAGCCATGGTGGCCACAGAAGTACTGCAACCTCTAGGTCTTTTAAAAGAGGAATTAGAAAGGGATCTGAAGGACTGAAGTCAATTGGCCGATCACTTGGATTTGGGGTATCTAGGGCAGTGTTCCCTGAAGATCTTAAAGTTTCAGAAAAGAAGATATTTGACCCTCAAGACAAATTTTTGCTCTTGTGGAATAAGCTTTTTGTTATCTCATGCATTTTGGCCGTGTCTGTGgatccactgtttttttatctCCCTGTCATCAATGATAAATTACTCTGTCTTGGTATAGACCGAAAGTTGGCAATTACAGTTACCACCTTGAGGACTTTTATTGATGCTTTCTACCTTATACACATGGCTCTTCAATTTCGTACTGCTTATATTGCCCCATCATCTCGTGTTTTTGGACGGGGTGAGCTTGTGATAGACCCAGCACAGATAGCCAAACGATACCTGCGGCGGTATTTCATTATTGATTTCCTATCAGTGTTGCCCTTACCACAGATTGTAGTTTGGAGATTTCTGCAGAGGTCAAAAGGTTCAGATGTACTTGCAACAAAGCGTGCCTTGCTGTTCATTATTTTGCTTCAGTACATTCCTAGATTTTTCCGGATGGTACCATTGACTTCTGAACTTAAGAGAACGGCTGGTGTCTTTGCTGAAACTGCATGGACAGGTGCTGCGTATTATTTGCTATTATTCATGCTTGCTAGTCATATAGTTGGGTCTTTTTGGTACTTGTTAGCTGTTGAACGCAATGACTTTTGCTGGCAAAAGGCTTGTAGTGACAGTGGgtacaataaaaatttcttgtatTGTGGCAACCAATACATGGAAGGTTATAGTGCCTGGCagaataaaagtgaaaacattCTTTCATCACAGTGCTCTGCAGATAATGATAATTCACCTTTTGACTATGGAATTTTCCAACAAGCCTTGTCATCTGGTATTGTTTCATCTAAGAAGTTCTTCTCCAAGTACTGCTATTGTTTATGGTGGGGGCTCCAGAATTTaagTACACTTGGCCAGGGTCTTCAAACTAGCACCTACACTGGGGAGGTTATCTTTTCAATAGCACTAGCCATAGCTGGCCTTATCCTCTTTGCGCTTCTGATTGGTAACATGCAGACGTATCTTCAGTCCCTTACAATTAGACTTGAGGAAATGAGAGTCAAAAGGCGTGACTCAGAACAGTGGATGCATCATCGCTTACTCCCACCAGAGCTTAGAGAGCGTGTGAGGCGATATGATCAATATAAGTGGTTGGCAACACGTGGTGTAGATGAAGAAAGTTTGGTTCAGAGTTTGCCAAAGGATCTTCGAAGAGACATTAAGCGTCACCTTTGTCTGGCTCTAGTGAGAAGGGTTCCACTATTTGAGAGTATGGATGAGAGATTGCTTGATGCCATATGTGAGAGACTGAAGCCATGTTTATTTACAGAGAGTACTTTCATTGTCCGCGAAGGAGATCCAGTTGATGAGATGCTTTTCATCATACGGGGTCGCCTTGAGAGTGTTACCACAGATGGTGGGAGGAGTGGATTCTTTAATCGAGGTTTTTTAAAAGAGGCTGACTTTTGTGGAGAGGAGCTTTTGACCTGGGCACTGGATCCCAAATCTGGCTCTAACCTCCCATCTTCGACTCGAACAGTTAAAGCTTTAACGGAGGTCGAGGCTTTTGCCTTAACTGCTGAAGAGTTAAAGTTTGTTGCCAGTCAGTTTCGGCGCCTGCACAGTAGACAGGTTCAGCACACCTTTCGCTTTTACTCCCAACAATGGAGGACTTGGGCTGCATGCTTTATTCAAGCAGCATGGCGTCGGTATTCCAAAAGGAAAACTATGGAGCTTGGTCGGAAGGAAGAACCTGAGGAGTCTCGCAGCAATGCCACTGGCAGTTCGTACAGCCTTGGTGCCACCTTCTTGGCCTCAAGATTTGCCGCAAATGCGCTTCGCGGTGTACATCGCAATCGGGAAGCCAAGAGTGCCCGGGAGTTGGTGAAACTACAGAAACCTCCAGAGCCTGACTTTACTGCTGATGATGCAGACTAA 2190 0.4292 MFDCGYKSQYVGGQREKFVRLDDLDSRLSSSSEAAVKTSGFSIDKLSHGGHRSTATSRSFKRGIRKGSEGLKSIGRSLGFGVSRAVFPEDLKVSEKKIFDPQDKFLLLWNKLFVISCILAVSVDPLFFYLPVINDKLLCLGIDRKLAITVTTLRTFIDAFYLIHMALQFRTAYIAPSSRVFGRGELVIDPAQIAKRYLRRYFIIDFLSVLPLPQIVVWRFLQRSKGSDVLATKRALLFIILLQYIPRFFRMVPLTSELKRTAGVFAETAWTGAAYYLLLFMLASHIVGSFWYLLAVERNDFCWQKACSDSGYNKNFLYCGNQYMEGYSAWQNKSENILSSQCSADNDNSPFDYGIFQQALSSGIVSSKKFFSKYCYCLWWGLQNLSTLGQGLQTSTYTGEVIFSIALAIAGLILFALLIGNMQTYLQSLTIRLEEMRVKRRDSEQWMHHRLLPPELRERVRRYDQYKWLATRGVDEESLVQSLPKDLRRDIKRHLCLALVRRVPLFESMDERLLDAICERLKPCLFTESTFIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRGFLKEADFCGEELLTWALDPKSGSNLPSSTRTVKALTEVEAFALTAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKTMELGRKEEPEESRSNATGSSYSLGATFLASRFAANALRGVHRNREAKSARELVKLQKPPEPDFTADDAD 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1853 729 Pfam Cyclic nucleotide-binding domain 528 616 IPR000595 -
Ssu1g1853 729 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 12 726 - -
Ssu1g1853 729 SUPERFAMILY cAMP-binding domain-like 434 625 IPR018490 -
Ssu1g1853 729 ProSiteProfiles IQ motif profile. 641 670 IPR000048 GO:0005515
Ssu1g1853 729 Gene3D Helix hairpin bin 433 496 - -
Ssu1g1853 729 ProSiteProfiles cAMP/cGMP binding motif profile. 505 635 IPR000595 -
Ssu1g1853 729 MobiDBLite consensus disorder prediction 704 729 - -
Ssu1g1853 729 PANTHER NUCLEOTIDE-GATED ION CHANNEL, PUTATIVE-RELATED 12 726 - -
Ssu1g1853 729 Gene3D - 112 430 - -
Ssu1g1853 729 Gene3D Jelly Rolls 503 623 IPR014710 -
Ssu1g1853 729 Pfam Ion transport protein 108 431 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Ssu1g1853 729 CDD CAP_ED 505 636 IPR000595 -
Ssu1g1853 729 SMART cnmp_10 505 636 IPR000595 -
Ssu1g1853 729 SUPERFAMILY Voltage-gated potassium channels 100 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1853 Ssu-Chr1 47603404 47618449 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1853 11 726 Ion Channels AT5G57940 79.416 0.0 1157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1853 K05391 - gmx:100820202 1349.34