Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1845 ATGGAAGAGGAGCAAGAGATGCAGCAACGAGTCACTGACTCGTCCCTCGCCACCGAGTCACGCAGTTCCAGTCTTTCCGACGAAGCGCCACCCAACTCGGAAACCCTAGTTCTCCGTTCTTCGCTTCCGGACGACCACGCTACTCATATGCAGGGAAGCCCTACCGCACGTAAGGTTGGAAAAGATGAGAGTAAGGAGTCAGCTCGGCCTCCTGACAAGGAAACTATTGTAAAAGATGCAATTGAGGCACCTCAAAAGCAGACAGAAAATCAACTTCAGGTGTCTGTTTGTTCAACTTCATTATCTGAACTATCACCAACTTCTGTTTCACAGTCTTTATCGTCTGCCCCTAGTCCGACTGTACCAGAACAGAGACCGTCTCCTCCTAAGGCTAAGAGTGTACAAGTGCAGAAAGTAGACAAAAGAACTCCTTCTGGTGGTACAACCTTATCTTCTGTTTCTGTTGCAAGGGCATCTGCATCTGATGGATACAACTGGCGGAAGTACGGCCAGAAGCAAGTGAAGAGTCCTACAGGTTCTCGAAGCTATTACAGGTGTACCCATTCAAATTGTGGTGCTAAGAAGATTAAATTTTGTGACCATTCAGGACATGTGATAGAGATtgtttataaaagtcaacatagTCATGATCCCCCACATAAAATCGATTCCACTAAGGAAAGTAATGTCCTACCTTCCAGTGAACCTAAAGTAGAAAGCAGTGTTCCAAAGCAGCCTATCAGAGTTCTGAATGATTCTGATCCATCATCTTCTCCAGAAGTACCTTTACAAGAAGCACCTTGCAGTGCTGATAAGAATCTAGAAAACTCATCTAATGGTGAGAATGGTAAAGTTGTTTTGAAGGAAGAGCATGTTAATGACCCAGAGCCAAAAAGAAGATTGAACAAAGGTGATTTAACGTGCTTGGATTCAGCAGTAAAACCTGGAAAGAAGCCAAAGTTTGTTGTACATGCAGCAGAGGATGTGGGGATATCAGGTGATGGATACCGATGGCGcaaatatggacaaaaattggTAAAGGGAAATCCGCATTTCAGAAACTACTACAGATGCACCTCTGCTGGATGTCCTGTCCGAAAGCACATTGAGACTGCTGTGGATAACTCAAAAGCTCTCATCATAACATACAAGGGAGTACATGATCATGATATGCCTGTGCCCAAAAAAAGACATGGTCCACCAAGTGCTTCGCTTGTGGCTGCTGCAGCACCTGCTTCAATGAACAATTTGCAGTCCAAAAAAACTGGCTTGCTACAAAACCAGGAAACTTCTGCTCAATGCTCGGAGGACACAGAAGTAGAATTAACCGGGGAAGCGTTGGACCTCGGGGGTGAGAAAGCAATTGAATCAGCTCGAACTCTTCTGAGCATAGGCTTTGAAATTAAACCTTGTTGA 1416 0.4386 MEEEQEMQQRVTDSSLATESRSSSLSDEAPPNSETLVLRSSLPDDHATHMQGSPTARKVGKDESKESARPPDKETIVKDAIEAPQKQTENQLQVSVCSTSLSELSPTSVSQSLSSAPSPTVPEQRPSPPKAKSVQVQKVDKRTPSGGTTLSSVSVARASASDGYNWRKYGQKQVKSPTGSRSYYRCTHSNCGAKKIKFCDHSGHVIEIVYKSQHSHDPPHKIDSTKESNVLPSSEPKVESSVPKQPIRVLNDSDPSSSPEVPLQEAPCSADKNLENSSNGENGKVVLKEEHVNDPEPKRRLNKGDLTCLDSAVKPGKKPKFVVHAAEDVGISGDGYRWRKYGQKLVKGNPHFRNYYRCTSAGCPVRKHIETAVDNSKALIITYKGVHDHDMPVPKKRHGPPSASLVAAAAPASMNNLQSKKTGLLQNQETSAQCSEDTEVELTGEALDLGGEKAIESARTLLSIGFEIKPC 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1845 471 Gene3D WRKY domain 317 393 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu1g1845 471 Gene3D WRKY domain 147 220 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu1g1845 471 ProSiteProfiles WRKY domain profile. 155 219 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g1845 471 MobiDBLite consensus disorder prediction 56 80 - -
Ssu1g1845 471 MobiDBLite consensus disorder prediction 84 120 - -
Ssu1g1845 471 SUPERFAMILY WRKY DNA-binding domain 158 219 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu1g1845 471 SUPERFAMILY WRKY DNA-binding domain 327 392 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu1g1845 471 MobiDBLite consensus disorder prediction 212 303 - -
Ssu1g1845 471 Pfam WRKY DNA -binding domain 162 216 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g1845 471 Pfam WRKY DNA -binding domain 334 389 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g1845 471 MobiDBLite consensus disorder prediction 284 303 - -
Ssu1g1845 471 MobiDBLite consensus disorder prediction 138 159 - -
Ssu1g1845 471 MobiDBLite consensus disorder prediction 10 39 - -
Ssu1g1845 471 MobiDBLite consensus disorder prediction 1 182 - -
Ssu1g1845 471 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 6 469 IPR044810 GO:0003700
Ssu1g1845 471 MobiDBLite consensus disorder prediction 226 263 - -
Ssu1g1845 471 PANTHER WRKY TRANSCRIPTION FACTOR 32-RELATED 6 469 - -
Ssu1g1845 471 ProSiteProfiles WRKY domain profile. 327 392 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g1845 471 SMART WRKY_cls 332 391 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu1g1845 471 SMART WRKY_cls 160 218 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1845 Ssu-Chr1 47327151 47332759 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1845 73 471 WRKY Transcription Factor Family AT4G30935 52.415 1.69e-122 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu1g1845 WRKY 1.9e-22 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1845 - - gmx:100127388 736.487