Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1843 ATGGGTTTGGGAGTGTTTGGTTCTGTGCTAGTTCTGACACTTTTCTTCAAGCACTTGGCATCCCCGCAACCGAACACTGATGATTTCTTTGTGTCTGAGTTCTTGAAGAAGATGGGTATAGCATCCTCCCAGGTCTACAACTTTTCTGCTTCTGTTTGTTCATGGGAAGGGGTTTCATGTGATGCAAAGAGAGAATATGTTGTTGGGTTAGTCTTTTCTGGTATGGGCCTCTCTGGTCCTATTCCAGATACCACCATAGGCAAGCTCAGCAAGCTTCAATCTTTGGACCTTAGCAACAACAAAATCACTGACTTGCCTTCTGATTTCTGGAGTTTTAGCTTGCTCAAGATCCTTAACCTCTCCTCCAATCAGATTTCTGGTTCATTGACTAACAACATTGGAAACTTTGGTTTGCTAGAAGTGTTTGACTTGTCCAGCAACAGTTTCTCTGGGGAAATTCCTGAAGCTATTAGTTCCCTCATGAGTCTGCAGGTCCTCAAACTTGACCACAACAGGTTTGAGCAAAGAATTCCTTCTGGGATTCTCAAGTGCCACTCTCTAGTTTCAATTGATCTTTCTTCAAATCAGCTAAGTGGGACAGTTCCAGATGGTTTTGGTGATGTTTTTCCTAATCTCATTACCTTGAACCTTGCTGGGAATAGTATTAATGGCCGTGATTCGGATATTTCTGGGTTGAAGTCCATTGTGAGTCTCAACATATCAGGCAATGCTTTTCAGGGTTCTGTGATGAGTTTGTTTCAGGGAATTCTTGAAGTCATGGACCTTAGCAGAAACCAATTTGAAGGTCACATTTCTCAGGTACATTCCATCTCTAATTACAGTTGGTCTCATTTAGTTTATCTGGATTTGTCAGAGAATCAGCTTGATGgggaaattttccaaattttgaaTGAATCCAAGAATCTAAAGCACCTTAATCTTGCTGACAATAGATTTAGCAGACAGAAATTCCCCAAGATTGAAATGCTCTCAGGATTGGAATATCTGAACTTGTCCAAAACTAGTCTGATTGGTTACATTCCTGCTAAAATCTCACAACTGAGTAATTTGAATGCACTTGATGTTTCTATGAATCATCTCATAGGGCAAATCCCTTTACTAAACTATAAAAACCTCCAAGTTCTTGACCTTTCAAACAACAATCTGAGTGGAGATGTCCCTTCATCAGTCATAGAGAAACTTCCTTTAATGGAGAAATACAACTTCTCTTATAATAACTTAACATTCTGTGCTTTGGAAATCAAACAAACTATCCTCCAAACAGCATTCTATGGATCAGTGAACAGTTGCCCAATTGCTGCAAATCCAAGTCTTCTGAAAAAAAGAGCCACTCAAAATAAGGGAATCAAGCTAGCTCTGGCATTGACCCTCTCAATAATCTGCTTGATTGCTGGGCTTTTGCTTCTAGCATTTGGTTGCCTTAAGAAAACAAAACCATGGCCTGTTAAGCAAACTTCATACAATGAAGAACATAACATGTCAGGTCCCTTCTCATTCCACACTGATTCAACCACTTGGGTGGCTGATGTTAAGCAAGCAACATCTGTCCCAGTAGTAATCTTTGATAAGCCACtgttaaatattacatttgcaGACCTCTTGGCTGCAACTTCAAATTTTGATAGGGGTACCCTTCTGGCTGAAGGAAAATTTGGGCCTGTTTATAGAGGTTTTCTACCTGGGGGTATTCATGTAGCAGTCAAAGTTCTGGTGGTTGGATCTACTCTGACTGATAAAGAAGCTGCAAGAGAGCTGGAGTATCTTGGTAGAATCAAGCACCCCAATCTTGTTCCTCTAACTGGATATTGTGTAGCTGGGGATCAGAGAATTGCCATATATGACTACATGGAGAATGGGAACCTGCAAAATTTGCTTTATGACTTGCCACTTGGGGTACTACAAAGGACAGATGATTGGAGCACAGATACATGGGAAGAAGATGACAGTAATGGCATTCAAAATGCTGGATCAGAAGGAATGCTCACAACTTGGAGATTTCGCCATAAAATTGCACTCGGTACTGCCCGAGCATTGGCATTTCTGCATTATGGATGCTCCCCACCAATCATTCACAGAGATGTTAAAGCTAGCAGTGTTTATTTGGATTATAACTTGGAGCCAAGACTGTCAGATTTTGGGCTGGCTAAGATTTTTGGGAGTGGCTTGGATGAAGAGATTGCACTTTGTTCACCTGGTTATGTTCCACCAGAGTTTTCTCAACCAGAATTTGACACCTCAACTCCAAAATCTGATGTGTACTGTTTTGGGGTTGTTCTCTTTGAGCTACTAACTGGGAAGAAGCCAGTTGGAGATGATTATCCTGATGAGAAAGAAGCAACTTTGGTTAGTTGGGTCAGAGGACTGGTGAGAAAGAACAAAGCTTCAAGAGCTATTGATCCAAAAATTCATGATACTGGACCAGAAGAGCAAATGGAGGAGGCCCTTAAGATCGGTTATCTTTGCACTGCTGACCTTCCTTCCAAGCGACCAAGCATGCAGCAGATAGTTGGTCTTCTTAAAGATATTGAACCTTCTGCTAATTAG 2565 0.407 MGLGVFGSVLVLTLFFKHLASPQPNTDDFFVSEFLKKMGIASSQVYNFSASVCSWEGVSCDAKREYVVGLVFSGMGLSGPIPDTTIGKLSKLQSLDLSNNKITDLPSDFWSFSLLKILNLSSNQISGSLTNNIGNFGLLEVFDLSSNSFSGEIPEAISSLMSLQVLKLDHNRFEQRIPSGILKCHSLVSIDLSSNQLSGTVPDGFGDVFPNLITLNLAGNSINGRDSDISGLKSIVSLNISGNAFQGSVMSLFQGILEVMDLSRNQFEGHISQVHSISNYSWSHLVYLDLSENQLDGEIFQILNESKNLKHLNLADNRFSRQKFPKIEMLSGLEYLNLSKTSLIGYIPAKISQLSNLNALDVSMNHLIGQIPLLNYKNLQVLDLSNNNLSGDVPSSVIEKLPLMEKYNFSYNNLTFCALEIKQTILQTAFYGSVNSCPIAANPSLLKKRATQNKGIKLALALTLSIICLIAGLLLLAFGCLKKTKPWPVKQTSYNEEHNMSGPFSFHTDSTTWVADVKQATSVPVVIFDKPLLNITFADLLAATSNFDRGTLLAEGKFGPVYRGFLPGGIHVAVKVLVVGSTLTDKEAARELEYLGRIKHPNLVPLTGYCVAGDQRIAIYDYMENGNLQNLLYDLPLGVLQRTDDWSTDTWEEDDSNGIQNAGSEGMLTTWRFRHKIALGTARALAFLHYGCSPPIIHRDVKASSVYLDYNLEPRLSDFGLAKIFGSGLDEEIALCSPGYVPPEFSQPEFDTSTPKSDVYCFGVVLFELLTGKKPVGDDYPDEKEATLVSWVRGLVRKNKASRAIDPKIHDTGPEEQMEEALKIGYLCTADLPSKRPSMQQIVGLLKDIEPSAN 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1843 854 ProSiteProfiles Protein kinase domain profile. 547 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1843 854 Pfam Protein tyrosine and serine/threonine kinase 551 844 IPR001245 GO:0004672|GO:0006468
Ssu1g1843 854 Gene3D Ribonuclease Inhibitor 30 178 IPR032675 -
Ssu1g1843 854 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 851 - -
Ssu1g1843 854 Pfam Leucine Rich Repeat 378 396 IPR001611 GO:0005515
Ssu1g1843 854 Pfam Leucine rich repeat 81 125 IPR001611 GO:0005515
Ssu1g1843 854 Pfam Leucine rich repeat 186 244 IPR001611 GO:0005515
Ssu1g1843 854 Gene3D Transferase(Phosphotransferase) domain 1 623 854 - -
Ssu1g1843 854 PRINTS Leucine-rich repeat signature 376 389 - -
Ssu1g1843 854 PRINTS Leucine-rich repeat signature 92 105 - -
Ssu1g1843 854 ProSiteProfiles Leucine-rich repeat profile. 378 400 IPR001611 GO:0005515
Ssu1g1843 854 ProSiteProfiles Leucine-rich repeat profile. 91 112 IPR001611 GO:0005515
Ssu1g1843 854 Gene3D Ribonuclease Inhibitor 375 428 IPR032675 -
Ssu1g1843 854 SUPERFAMILY L domain-like 43 418 - -
Ssu1g1843 854 SMART LRR_typ_2 376 400 IPR003591 -
Ssu1g1843 854 SMART LRR_typ_2 112 136 IPR003591 -
Ssu1g1843 854 SMART LRR_typ_2 160 184 IPR003591 -
Ssu1g1843 854 SMART LRR_typ_2 209 232 IPR003591 -
Ssu1g1843 854 SMART LRR_typ_2 89 111 IPR003591 -
Ssu1g1843 854 SUPERFAMILY Protein kinase-like (PK-like) 532 846 IPR011009 -
Ssu1g1843 854 Pfam Leucine Rich repeat 283 298 IPR001611 GO:0005515
Ssu1g1843 854 Gene3D Phosphorylase Kinase; domain 1 507 622 - -
Ssu1g1843 854 Gene3D Ribonuclease Inhibitor 179 278 IPR032675 -
Ssu1g1843 854 Gene3D Ribonuclease Inhibitor 279 374 IPR032675 -
Ssu1g1843 854 PANTHER CONCANAVALIN A-LIKE LECTIN/GLUCANASE DOMAIN-CONTAINING PROTEIN-RELATED 1 851 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1843 Ssu-Chr1 47192033 47194597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1843 77 849 Receptor kinase-like Gene Family AT5G07280 32.338 3.39e-111 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Ssu1g1843 PK_Tyr_Ser-Thr 6.7e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1843 - - gmx:100807051 1543.87