Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1842 ATGATGCGAAAATTGTTCTTCCGAAAGCCCCCCGATGGCCTTCTCGAGATCTCTGACAGAGTCTACGTTTTCAATTGCTGTTTCGGCGCGCAACACAAATGGAGCGAAGAACGTTACAAACTCCACGTGGAAAAGGTTATTGGTCAATTTCGAACGACCGTGCCTGATGCTTCCGTTTTGGTGTGCAATTTCCGTGACGAAGAGACCAAAGCCAAGACGTTGTTTAACGCGCACGACGACGTTTCTCCCGTGGACTACCCTCGCCACTACTTGGGTTGCTCCGTGCTCAAAACGGAGGACACGTGGCGCTTTCTGAGGGCGTGCGAGAACTGGCTCTTGCGCGGGCACCGCGACGTCGTTTTAATGCACTGCGAGAAAGGTTGTTGGCCGGTTTTGGCGTTCGCGTTGGCTGCGTGGTTGGTTTTTCGGAAACAGTGCGAGGGAGAGAAGAGGGCTTTGGATATGGTTTACGAACAGGCGCCACGTCAGCTTTTGCATTCGTTGATAACCGTGAATCAGATTCCGTCTCAGTTGAGGTATCTGCAGTACGTTGCCACGTGGAACGGAGCGTTGGATTCGGTTCCGTTGAACAGGGTAATGAGGTTGGACTGCGTCGTTCTCAGGTTTATGCCGAATTTTGGTGGCGAAGGTGGTTGTGGTCCGGTGTTGAGAATTTATGGATGCGATCCTTTTGTTGAGGATGGAAGTCCGAAATTGTTGTACTCGACAACTGAGGGAAGAAAAAATGCCCGGGATTACGAACAGGGAGATTGTGATACAATTAAAGTCAATATTAATTGCCATACTAAAGGTGATGTCCTGATTGAGAGCATTAACCTGATCGGTGACACGGAGAATGAACAGATAATGTTCCGAGTCATGTTCAATGCGTCTTTTATTGGAACTAATGTATTACTGCTTAACCGGGACAAAATTGATGTTTTATGGTCTGCTAAAGATCGCTTCCCAAAGGATTTCAGAGCAGAGATTCTTTTCTCAGAAATGGATGCTTCTACAGCTGTTCTTAAGAATGGCACCTCATGCTTTGAAGAGAAGGAGGGACTGCCAATTGAAGCATTTTCCAAAGTTCAAGAAATCTTTAGCTATGCAGACTGGATGAATCCCATGGAAGATCCTGCACTAAATGTGCCCCAACAGAACCGTGCTTCACCTAACAATACCATACATGAAAAGTTGAATACAGGTTCAAATCAGTATGTAGAGAGTGGCAGTCCTTTGCATAGAAAAGGTCCTCAAATGCCTTGGGAGAAAAAGAATGAagcaaatttctttttttcttcaaatatggAAAACCAGTTTGTGACAGCTAAGCAATCACCAGATAATAATATACGTAGAAAAGAGGATAAGACCATCAAAGCTGATGCTACTATTCCACGGCCTAGTAAGTCTGACACCATCTGTCAACAAATGCCTAGCCCTTTTGAAAGAACCTCGGAGTCCAGCAACTGTGTAACAAATTGTACAAATCTTTCAATAAAACTACATCCATCTGATTTTGCCTTATCTGATTCTGTGGACACCTCTTCTAGTGATTCAATTTCACCCCAAACACCTCCACCATTGCCTCGCTTGACTAGGAGTGTTAAAGAAGTTCATGATTCTCATCCTCACAAGGATTCACATCCCCATCATCATTCACCTTCAAGACATCTTACTGAAGAAACTAAATCCCAATCTCAAGATAGAAGTCAGTCACGTAATTTTAGCTCTACAACGGGAACTCCTCTCTCAATTACTTTTCAGAATAAGTCACCAGATGATTCTGCTTCCCATCCTCCAGCTTCTGCAATTACTTCAAATCAACCACCTCCTCTAAAGAAGATTTTACCAGATAAAACAGAACTTGATTCTTCCCCTTCACAACCTCAAACACCACCACCTCCTCCCCCTCCTCCAATAAAGGAACATGAACCAATTAAAGCTGGACCTCCTCCATCCCCACCAACTCCTCCTCCAAAGGATGAAAGACATATCAAATCTGGAACCCCTCCATCACCACCTCCTTGTCCTGGAAAAGCTGCTGGTTCAACTATAGAACCACtagcaccgccaccaccacctccagCCACAGAACTTTCCTCTGACTACTCTAATTCTTCATTGCAGAAGTCTCCACCTGTTCCTGTTGCTCCACCAGCTCCAACTTCCATTGGTAAAGGAGGTATACAACTAGACAATGGTTTTCCTAGGTCACTTTCCATGGGTGCTTGTGGACATTATGTGTCAGGCACAAAAGGACATTCCTCCATTGGCTCAAAGGGACAAATTCTATCACATACAAATTCAATGAGTCAAACCAAAAAATTGAAGCCATTGCATTGGTTGAAACTGTCTAGAGCAGTGAAGGGAAGTTTGTGGGCAGAGACACAGAAATCTGATGAAGCTTCCAAAGCCCCAGAGATTGATATGTCAGAGCTTGTAAGTCTCTTCTCAGCCGCAGTGCCAAGTTCAGGCCCTTCCAAAATGTCAAATGTGCAAAGCTCTGTTGGGCCAAAATCTGATAAAGTGCAACTGATTGATCATACACGAGCATATAATTGTGAAATTCTTCTTTCAAGAGTGAAAGTGCCGTTGCATGATTTAATGAAATCAGTGTTAGCACTAGAAGAATCTGCATTAGACACTGATCAAGTTGAGAACCTGatcaaattttgtcctaaaaaagAGGAGATAGAAGTACTCAAGGGTTATACTGGAGAAAAGGAGAAGCTTGGGAGATGTGAACAGTGCTTCTTGGAGTTGATGAAAGTTCCACGGGTAGAATCTAAGCTCAGAGTCTTTTCATTCAAGATTCAGTTTCACTCTCAGaTCAAGAATTCTGTCAAGTTAAAGAGAATCATGCAAACAATACTTTCTCTGGGAAATGCTTTGAACCAGGGAACTGCTAAGGGCTCTGCTATTGGATTCAGACTGGATAGTCTTCTTAAACTCACTGAGACACGTGCACGGAACAAGAAGATAACTCTCATGCATTACCTTTGTAAGGTTCTGGCAGATAAATTACCAGAAGTTTTAGATTTCTCCAAGGATCTTGCTAACCTCGAGCCAGCAGCAAAGGTTCTGGACCTCTCTCAAGGCTCTTCATTTCACTATGTTGATGGACAATATATATTTGCTAGCGTTGACATGTATGAGTATATCCAGATCCAATTGAAGTTGCTGGCAGAGGAGATGCAAGCTATAAGCAAAGGATTAGAGAAAGTTGAACATGAACGATCCACCTCTGAAAATGATGGTCATATATCAGAAACTTTCTGCAAGaaGTTGAAAGAGTACCTCTGTTCTGCAAAGGCCGAAGTCTCTTCATTGTCTTCACTATATTCTGTCGTGGGCAGGAACGTAGAtgctttgattttttattttggtgaagATCCATCTCGCTGCCCTTTTGAGCAAGTTGTCACAACTTTGCTCAACTTTACCAGAATGTTCAACAAAGCCCATGAAGAAAACTGCAAGCAGCTTGAGCTTGAAATGAAGAAAACGGAAGAAAGTGTGAAATAG 3528 0.4235 MMRKLFFRKPPDGLLEISDRVYVFNCCFGAQHKWSEERYKLHVEKVIGQFRTTVPDASVLVCNFRDEETKAKTLFNAHDDVSPVDYPRHYLGCSVLKTEDTWRFLRACENWLLRGHRDVVLMHCEKGCWPVLAFALAAWLVFRKQCEGEKRALDMVYEQAPRQLLHSLITVNQIPSQLRYLQYVATWNGALDSVPLNRVMRLDCVVLRFMPNFGGEGGCGPVLRIYGCDPFVEDGSPKLLYSTTEGRKNARDYEQGDCDTIKVNINCHTKGDVLIESINLIGDTENEQIMFRVMFNASFIGTNVLLLNRDKIDVLWSAKDRFPKDFRAEILFSEMDASTAVLKNGTSCFEEKEGLPIEAFSKVQEIFSYADWMNPMEDPALNVPQQNRASPNNTIHEKLNTGSNQYVESGSPLHRKGPQMPWEKKNEANFFFSSNMENQFVTAKQSPDNNIRRKEDKTIKADATIPRPSKSDTICQQMPSPFERTSESSNCVTNCTNLSIKLHPSDFALSDSVDTSSSDSISPQTPPPLPRLTRSVKEVHDSHPHKDSHPHHHSPSRHLTEETKSQSQDRSQSRNFSSTTGTPLSITFQNKSPDDSASHPPASAITSNQPPPLKKILPDKTELDSSPSQPQTPPPPPPPPIKEHEPIKAGPPPSPPTPPPKDERHIKSGTPPSPPPCPGKAAGSTIEPLAPPPPPPATELSSDYSNSSLQKSPPVPVAPPAPTSIGKGGIQLDNGFPRSLSMGACGHYVSGTKGHSSIGSKGQILSHTNSMSQTKKLKPLHWLKLSRAVKGSLWAETQKSDEASKAPEIDMSELVSLFSAAVPSSGPSKMSNVQSSVGPKSDKVQLIDHTRAYNCEILLSRVKVPLHDLMKSVLALEESALDTDQVENLIKFCPKKEEIEVLKGYTGEKEKLGRCEQCFLELMKVPRVESKLRVFSFKIQFHSQIKNSVKLKRIMQTILSLGNALNQGTAKGSAIGFRLDSLLKLTETRARNKKITLMHYLCKVLADKLPEVLDFSKDLANLEPAAKVLDLSQGSSFHYVDGQYIFASVDMYEYIQIQLKLLAEEMQAISKGLEKVEHERSTSENDGHISETFCKKLKEYLCSAKAEVSSLSSLYSVVGRNVDALIFYFGEDPSRCPFEQVVTTLLNFTRMFNKAHEENCKQLELEMKKTEESVK 1175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1842 1175 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 335 IPR035892 -
Ssu1g1842 1175 Gene3D - 194 338 - -
Ssu1g1842 1175 Coils Coil 1059 1079 - -
Ssu1g1842 1175 Gene3D Protein tyrosine phosphatase superfamily 12 190 IPR029021 -
Ssu1g1842 1175 SUPERFAMILY Formin homology 2 domain (FH2 domain) 671 1170 - -
Ssu1g1842 1175 MobiDBLite consensus disorder prediction 463 490 - -
Ssu1g1842 1175 Coils Coil 1153 1175 - -
Ssu1g1842 1175 PANTHER FORMIN-J 2 1172 - -
Ssu1g1842 1175 MobiDBLite consensus disorder prediction 628 659 - -
Ssu1g1842 1175 Pfam C2 domain of PTEN tumour-suppressor protein 198 334 IPR014020 -
Ssu1g1842 1175 MobiDBLite consensus disorder prediction 569 610 - -
Ssu1g1842 1175 MobiDBLite consensus disorder prediction 469 490 - -
Ssu1g1842 1175 Gene3D Formin, FH2 domain 762 1163 IPR042201 -
Ssu1g1842 1175 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 10 184 IPR029021 -
Ssu1g1842 1175 ProSiteProfiles C2 tensin-type domain profile. 197 335 IPR014020 -
Ssu1g1842 1175 SMART PTEN_C2_2 195 334 IPR014020 -
Ssu1g1842 1175 MobiDBLite consensus disorder prediction 554 568 - -
Ssu1g1842 1175 Pfam Formin Homology 2 Domain 771 1028 IPR015425 -
Ssu1g1842 1175 Pfam Formin Homology 2 Domain 1056 1152 IPR015425 -
Ssu1g1842 1175 MobiDBLite consensus disorder prediction 669 699 - -
Ssu1g1842 1175 MobiDBLite consensus disorder prediction 510 732 - -
Ssu1g1842 1175 ProSiteProfiles Formin homology-2 (FH2) domain profile. 767 1175 IPR015425 -
Ssu1g1842 1175 SMART it6_source 767 1167 IPR015425 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1842 Ssu-Chr1 47070860 47086166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1842 1 453 Protein tyrosine phosphatase (PTP) family AT5G58160 46.827 8.06e-132 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1842 - - aprc:113848377 1281.54