Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1838 ATGGGTGAGAAAAGCAGCAACAGCGGCGCCGCGATTCACTCGACGCTGCTCCACGGGAAGTACGAGCTGGGCCGGTTACTGGGCCACGGAACCTTCGCGAAGGTGTACCACGCGCGCAACCTGCAGACCGGAAAGAGCGTGGCGATGAAGGTGGTGGGGAAGGAGAAGGTGATGAAAGTGGGCATGATGGAGCAGATCAAGAGAGAGATCTCGGCCATGAACATGGTGAAGCACCCCAACATCGTGCAGCTCCACGAGGTCATGGCGAGCAAGTCCAAGATCTACATCGCCATGGAACTCGTCCGCGGCGGCGAGCTCTTCAACAAGATCGCCCGCGGCCGCCTCAGGGAAGAGACGGCGCGACTCTACTTCCAGCAGCTCGTCTCCGCCGTCGACTTCTGCCACAGCCGCGGCGTCTACCACCGCGACCTCAAGCCGGAGAACCTCCTCCTCGACGCGTACGGCAACCTCAAGGTCACCGACTTCGGCCTCAGCACCTTCTCGGAACACCTCCGGCAGGACGGTCTGCTGCACACCACGTGCGGCACGCCGGCGTACGTGGCGCCGGAGGTCATCGGAAAAAAAGGCTACGACGGCGACAAGGCCGATATTTGGTCTTGTGGTGTAGTCCTCTATGTTCTCCTCGCCGGGTTTTTACCCTTTCAGGATGACAACTTGGTGGCCTTGTATAAGAAAATTTACCGCGGTGACTTTAAGTGTCCACCGTGGTTTTCATCCGAGGCTCGCCGGCTTGTTACCAAGCTCCTCGACCCGAACCCCAATACCCGAATCACGATTTCGAAGATTATGGACTCGTCCTGGTTTAAGAAACCGGTTCCGAAGAGCGTGGTGGGAGCGAAAAGAGAGGAATTGGATTTGGAGGAGAAGACTAAGCAGCAGCAGCAGGAGCAGGAAGGGTCTACTACGATGAATGCTTTTCACATAATTTCCCTTTCGGAGGGCTTCGATTTGTCGCCGTTGTTCGAGGAGAAGAAGAGGGAGGAGAAGGAGATACGGTTCGCGACGACGCGCTCCGCGAGTAGTGTGATTTCGCGGCTGGAGGAGGTGGCGAAGGCGGTTAAGTTTGACGTGAAGAAGAGTGAGACGAAGGTGAGGTTGCAGGGTCAGGAGCGGGGGCGGAAAGGGAAGCTGGCTATTGCTGCAGATTTGTACGCCGTGACGCCGTCGTTTTTGGTCGTCGAGGTTAAGAAGGACAACGGCGACACCTTGGAGTATAACCAGTTCTGCAGCAAGGAGCTTCGTCCCGCGCTTAAAGACATCGTGTGGAGGACCTCCCCTGCTGAGAATCCTACGCCTGCTTGA 1323 0.5729 MGEKSSNSGAAIHSTLLHGKYELGRLLGHGTFAKVYHARNLQTGKSVAMKVVGKEKVMKVGMMEQIKREISAMNMVKHPNIVQLHEVMASKSKIYIAMELVRGGELFNKIARGRLREETARLYFQQLVSAVDFCHSRGVYHRDLKPENLLLDAYGNLKVTDFGLSTFSEHLRQDGLLHTTCGTPAYVAPEVIGKKGYDGDKADIWSCGVVLYVLLAGFLPFQDDNLVALYKKIYRGDFKCPPWFSSEARRLVTKLLDPNPNTRITISKIMDSSWFKKPVPKSVVGAKREELDLEEKTKQQQQEQEGSTTMNAFHIISLSEGFDLSPLFEEKKREEKEIRFATTRSASSVISRLEEVAKAVKFDVKKSETKVRLQGQERGRKGKLAIAADLYAVTPSFLVVEVKKDNGDTLEYNQFCSKELRPALKDIVWRTSPAENPTPA 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1838 440 Gene3D Phosphorylase Kinase; domain 1 18 102 - -
Ssu1g1838 440 PANTHER - 13 435 - -
Ssu1g1838 440 ProSiteProfiles NAF domain profile. 305 329 IPR018451 GO:0007165
Ssu1g1838 440 Pfam Protein kinase domain 21 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1838 440 ProSitePatterns Serine/Threonine protein kinases active-site signature. 139 151 IPR008271 GO:0004672|GO:0006468
Ssu1g1838 440 Coils Coil 284 304 - -
Ssu1g1838 440 Gene3D Transferase(Phosphotransferase) domain 1 103 280 - -
Ssu1g1838 440 SMART serkin_6 21 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1838 440 Gene3D Kinase associated domain 1, KA1 304 430 - -
Ssu1g1838 440 CDD CIPK_C 311 425 - -
Ssu1g1838 440 SUPERFAMILY Protein kinase-like (PK-like) 18 282 IPR011009 -
Ssu1g1838 440 CDD STKc_SnRK3 20 274 - -
Ssu1g1838 440 ProSitePatterns Protein kinases ATP-binding region signature. 27 54 IPR017441 GO:0005524
Ssu1g1838 440 Pfam NAF domain 308 366 IPR004041 GO:0007165
Ssu1g1838 440 ProSiteProfiles Protein kinase domain profile. 21 275 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1838 440 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 13 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1838 Ssu-Chr1 46639007 46640329 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1838 3 434 CBL-interacting serine-threonine protein kinases AT4G30960 73.303 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Ssu1g1838 Pkinase 4.2e-73 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1838 - K07198 gmx:100806762 779.245