Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1825 atgttaacaCCAAATCCAAAGGTACAATGTACAAAGCAAAGGGCCTTTTTAAATGCTTTTCGTGATGCTTTGATTATTGATCCCGAACATGTCCCTAGCTTGATTTCTACTGCGGTGGTTCTTAGACGGTGTAGTAATAGATCAAATTCTGCTATCAAAATCTTTCTGATGGATGCACTACAGCATGACAGATTTAATGCTTTTGCTTGGTATAATCTTGGCATTCTTCACAAGGATGAGGTTACAATGCTAGAAGTAGAAGAATGTTTTGAGACAGCAAACCTTCCTGTTGTGGGTTTCTCAGTCTGGTCGTTGTTGATGGGTTCAGTTCATTTTCATCATTGTTGGTGA 351 0.3818 MLTPNPKVQCTKQRAFLNAFRDALIIDPEHVPSLISTAVVLRRCSNRSNSAIKIFLMDALQHDRFNAFAWYNLGILHKDEVTMLEVEECFETANLPVVGFSVWSLLMGSVHFHHCW 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1825 116 Gene3D - 8 94 - -
Ssu1g1825 116 PANTHER PROTEIN NPG1 16 94 IPR043376 -
Ssu1g1825 116 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 16 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1825 Ssu-Chr1 45689847 45690699 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1825 17 93 Calmodulin-binding Proteins AT4G28600 50.617 3.46e-17 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1825 K21843 - gmx:100784353 127.487