Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1821 ATGGAAAGTTCCAAGAACAATAGAGTGGAGAAGCGAGGATATGAGCTAGTTGAGGAGGGTGATGATGCACAGCAACATCTTACACAGTCAAAGAAACCAAAACTACCCGGTTTAGCCAGCGTGATTGTGGAAGCTTTAAAGGTGGATAGTCTGCAGAGACTTTGCTCGTCTTTGGAACCTCTTCTCAGAAAAATTGTCAGTGAAGAAGTGGAGCGTGCTTTGGCAAAATTGGGCCATGCTGAACTGGCTGAAAGATCTCCACCACCAAGATTAGAAGGACCAGGGGAAAAGAATCTGCTGCTTCAGATCAGAACAAGAATGCCACCTCATTTGTTCACAGGGGGAAAGGTTGAGGGAGAGCAAGGATCAGCAATCCATGTTGTGTTAATGGATCCCAACACAGACAATGTTGTTCAAGTTGGACCAGAATCTGTTGCTAAATTGAATGTGGTGGTACTTGAAGGTGACTTTAATGAGGAAGTAGATGATGATTGGACAAAAGAGCACTTTGAAAGCCATGAAGTAAAGGAACGTGAGGGGAAAAGGCCACTTCTAACTGGAGATTTGCAGGTTAGCCTAAAAGAAGGGGTAGGAACCTTAGGTGATCTTACTTTCACTGACAATTCTAGCTGGATAAGAAGCAGAAAATTCCGGCTTGGTGTTAAGGTGGCTCCTGGTTATTGTGAGGAGATTCGCATTCGTGAGGGAAAGACTGAAGCCTTTGCTGTTAAAGATCATAGAGGAGAATTATACAAGAAGCACTATCCACCAGCTTTGCATGATGAAGTTTGGAGATTGGATAGGATAGCTAAGGATGGGGCActtcacaaaaaattaattctagcaaaaatagtaaCAGTAGAAGATTTCCTACGTCTTCTTGTCCGCGAGCCACAGAAGCTAAGAAGTATACTTGGTAGTGGAATGTCCAATAGAATGTGGGAGAATACTGTGGAGCATGCCAAGACATGTGTTTTGGGTGGCAAGCTCTTTGTTTACTACACTGATGAAACCAATAGCTCTGGCATTGTGTTCAACAATATTTACGAGCTGAGAGGCCTCATTGCTGATGGCCAATTCTTCTCTTTGGAATCACTTACTCCAAATCAGAAGATGTCTGTGGATTCCTTGGTGAAGAAAGCATATGAAAATTGGGACCAAGTTGTAGAATATGATGGAAAAGTTTTAAATTCTCTTACTAATTCAAAAAAGGGATCGAGAGCTGTAGCCACTCAAATAATGCACCATAACAGTTTCCCAGAGCAGCAGTATACCTCTGCAAAGAACAAGGTGTCATATGTATCCTCTGAACCAAATCAACACTtgcaaataacaaataactacTCATCCGGTCTTGGTTTGGCTGATTATCCATTTGGGAGATCTGATAGTCAGATGGTAGGAACATCTTTAACTGACTCTCAAATAGCATTGCCTGGCAGCATGAATTACATGTCAGGTGAAAATCATGAAATTGGCAGTACTTATTTTGCTGGAGATTGGTCCCGTCCGAGAAATGAACAAGGGTTGGAAGACATTGTTGCGGAAGAACTCCGTCTTAGGAGTTCAGAGATGTTGGAGAGTGATGATATGCAGAGGTTACTTAAGACAATTAACGCAGGAGTCAACATGTCAGCTAATCTGGGTCATTCTAATGAGGGTTGTTACACCTATAGCCTTCAGTATGAGCCTCAGATGTATCATTCATTCAGTGAGGATCAGGGGAAGCCTTCAGGGAAGGCTGTTGTTGGGTGGCTTAAGCTCAAAGCTGCTTTAAGGTGGGGCATATTTATCAGAAAAAAAGCTGCAGAAAGGAGAGCACAGCTCACTGAGTTGAATTGA 1842 0.418 MESSKNNRVEKRGYELVEEGDDAQQHLTQSKKPKLPGLASVIVEALKVDSLQRLCSSLEPLLRKIVSEEVERALAKLGHAELAERSPPPRLEGPGEKNLLLQIRTRMPPHLFTGGKVEGEQGSAIHVVLMDPNTDNVVQVGPESVAKLNVVVLEGDFNEEVDDDWTKEHFESHEVKEREGKRPLLTGDLQVSLKEGVGTLGDLTFTDNSSWIRSRKFRLGVKVAPGYCEEIRIREGKTEAFAVKDHRGELYKKHYPPALHDEVWRLDRIAKDGALHKKLILAKIVTVEDFLRLLVREPQKLRSILGSGMSNRMWENTVEHAKTCVLGGKLFVYYTDETNSSGIVFNNIYELRGLIADGQFFSLESLTPNQKMSVDSLVKKAYENWDQVVEYDGKVLNSLTNSKKGSRAVATQIMHHNSFPEQQYTSAKNKVSYVSSEPNQHLQITNNYSSGLGLADYPFGRSDSQMVGTSLTDSQIALPGSMNYMSGENHEIGSTYFAGDWSRPRNEQGLEDIVAEELRLRSSEMLESDDMQRLLKTINAGVNMSANLGHSNEGCYTYSLQYEPQMYHSFSEDQGKPSGKAVVGWLKLKAALRWGIFIRKKAAERRAQLTELN 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1821 613 Pfam Calmodulin binding protein central domain 258 324 IPR046830 -
Ssu1g1821 613 Pfam Calmodulin binding protein C-terminal domain 329 391 IPR046829 -
Ssu1g1821 613 PANTHER OS02G0177800 PROTEIN 504 612 IPR012416 GO:0005516
Ssu1g1821 613 MobiDBLite consensus disorder prediction 1 31 - -
Ssu1g1821 613 PANTHER OS02G0562300 PROTEIN 504 612 - -
Ssu1g1821 613 Pfam Calmodulin binding protein-like N-terminal domain 101 246 IPR046831 -
Ssu1g1821 613 PANTHER OS02G0177800 PROTEIN 9 435 IPR012416 GO:0005516
Ssu1g1821 613 PANTHER OS02G0562300 PROTEIN 9 435 - -
Ssu1g1821 613 MobiDBLite consensus disorder prediction 1 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1821 Ssu-Chr1 45602200 45606063 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1821 1 613 Calmodulin-binding Proteins AT2G24300 62.319 0.0 740
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1821 - - gmx:100775528 1159.05