Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1820 ATGGCTGTGGAGAACCAAAGGGGTCATTTAGGGAATGAAGATGGGAGTAGTGACCCTTTCCCTGTAGGTATGCGTGTTCTGGCTGTGGATGACGACCCAATTTGCCTCAAGGTGCTGGAGAATCTGCTTCGCAAATGCCAGTATCAGGTTACTACAACTAGTCAGGCAGTTGAGGCGCTGAAAATGTTGAGGGAAAACAGAAATAAGTTTGACCTTGTTATCAGCGATGTGAATATGCCTGACATGGATGGATTTAAGCTCCTTGAGTTGGTGGGACTTGAAATGGACCTACCTGTCATCATGTTGTCAGCACACAGTGATACAAAGCTGGTGATGAAGGGTGTTACACATGGTGCATGTGACTACTTGCTGAAACCTGTTCGAATTGAAGAGCTGAAGAACATATGGCAACATGTCATCCGAAGAAAGAATTTTGATTCCAGGGATCAGAACAAGGCTTCCAATGAGGAGAAGACTCCTATTATTGTTGGGGAAGGTAGTCAAGGCCTAAGATCAGAAAACAGTGCTGACCAGAATAAAAGGCTTGGTAAAAAAAGGAAGGACCAAAGTGAGGAAGAAGACGAAGATGGGGAAGAGAATGGAGATGAGGAGGATCCCTCAGCACAGAAGAAACCTCGTGTAGTTTGGTCTGTTGAGCTGCATAGAAAATTTGTTGCTGCAGTTAATCAACTGAGCCTAGATAAGGCTGTTCCCAAGAAAATACTTGACCTGATGAATGTTGAAGGGCTTACAAGGGAAAATGTGGCAAGCCATCTACAGAAGTATAGACTATATCTGAAAAAGGCAACCCAGCAAGCTAATATGGTTGCTGCATTGGGCGGTAGTGATTCTTACCTACGTATGGGTTCAATAGATGGGTATGGAGATTTTTGCACCTCATCTGGATCTGGAAGGATCTCAAACTCTACATTACCATATGCATCTGGTGGAATTTTTGGTAGGCTGAATTCCCCAGCTGGCTTGAACATGAGAGGAATTAGTTCTTCTGCACTTATCCGGCCTGTTCAGTCTCAAAACATCAACAGCTCCTTAAACACACTTGGAAATATTCAGCCGTCCATGTTTCCTGCAAATCAAAGCTCAAGTTTATTACAGGGCATTCCAACATCAATTGAGCTTAACCAATCTAAGCAAAGCAACTGCACAACTGGAATGTCACAGTTAAACCAAGTTGATTCAAGTGGATTTACAGTTGCCTCTGGCTTCTCAGATAGTAGGGCTTCTGTTAATGGTGCAAACAATTCTCTGCCATGTGTctcaaataatcatataatgtTGCAAGGAAATCCACAGCAAACACATAGCCCAGGAGCATTTAGAAATCAATCTTCTGTTAGAGCGGCTTCTTTGAGCTCAGAATCTTTTGACATGGGCATATGTGGTTCTTCTAATTTGTTGGATTATAATCGATGTAATGAAAACTGGCAGAGTGCGGCTCAGTTGTCTAAATTTCCTGCCAATTCTTTGCCACTGTGTGAGGCTTTCAACAATGACCAACTGCCTCCCACTAGCATAAATGTTTCCAACTCAACTACTCATACTGGTAACAGTCCAGTTGATTTTTCTTCCAGAATGGCAATTCCTGTTCCTTTGGAGGATGCCAGAAATGAGCTGCGATGCCAAGAAGGCTTGATTGGGAATATTGTACAGCCTTCAAGCTACACCCCACAACAAAGGTGGGAAGAACATAAACTGGATTATAACCAAAACATGAGTCGTCCCTTCAATCCAGTAAATTCGCGTGCTTCTTCCAGTGGAGTGACAAGTTCTATGGGGCATGgtttaaaccaaaataatacaatttgTAGCAATAGAGTTAATGCATCTTTGGTTGGCCAACTAAATGGGGCATCCCCATCAATCACCCGGTGCACTGAAGTTGAGAAATTCTCTTCAGACATTCGACTGAAATCAAACGAGGCCTACATTTTGGAGCAAATGAAGTCCCAAGATGGATTTATGCAGAATGCTTTCGGCACCTTGGATGACATAATGGGTGCAATGGTCAAAAGGGAGCAAAATGAGTTGACTTTGTTGGATGGAGAAATGGGATTTGATGCGTACCCCGTTGGATCATGTAACTGA 2106 0.425 MAVENQRGHLGNEDGSSDPFPVGMRVLAVDDDPICLKVLENLLRKCQYQVTTTSQAVEALKMLRENRNKFDLVISDVNMPDMDGFKLLELVGLEMDLPVIMLSAHSDTKLVMKGVTHGACDYLLKPVRIEELKNIWQHVIRRKNFDSRDQNKASNEEKTPIIVGEGSQGLRSENSADQNKRLGKKRKDQSEEEDEDGEENGDEEDPSAQKKPRVVWSVELHRKFVAAVNQLSLDKAVPKKILDLMNVEGLTRENVASHLQKYRLYLKKATQQANMVAALGGSDSYLRMGSIDGYGDFCTSSGSGRISNSTLPYASGGIFGRLNSPAGLNMRGISSSALIRPVQSQNINSSLNTLGNIQPSMFPANQSSSLLQGIPTSIELNQSKQSNCTTGMSQLNQVDSSGFTVASGFSDSRASVNGANNSLPCVSNNHIMLQGNPQQTHSPGAFRNQSSVRAASLSSESFDMGICGSSNLLDYNRCNENWQSAAQLSKFPANSLPLCEAFNNDQLPPTSINVSNSTTHTGNSPVDFSSRMAIPVPLEDARNELRCQEGLIGNIVQPSSYTPQQRWEEHKLDYNQNMSRPFNPVNSRASSSGVTSSMGHGLNQNNTICSNRVNASLVGQLNGASPSITRCTEVEKFSSDIRLKSNEAYILEQMKSQDGFMQNAFGTLDDIMGAMVKREQNELTLLDGEMGFDAYPVGSCN 701
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1820 701 Pfam Myb-like DNA-binding domain 213 263 IPR001005 -
Ssu1g1820 701 Gene3D - 23 160 - -
Ssu1g1820 701 MobiDBLite consensus disorder prediction 177 191 - -
Ssu1g1820 701 Gene3D - 207 269 - -
Ssu1g1820 701 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
Ssu1g1820 701 PIRSF RR_ARR_type-B 1 701 IPR017053 GO:0003677|GO:0003700|GO:0009736
Ssu1g1820 701 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 682 IPR045279 GO:0009736
Ssu1g1820 701 MobiDBLite consensus disorder prediction 147 212 - -
Ssu1g1820 701 PANTHER TWO-COMPONENT RESPONSE REGULATOR 1 682 - -
Ssu1g1820 701 Pfam Response regulator receiver domain 26 134 IPR001789 GO:0000160
Ssu1g1820 701 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 211 264 IPR006447 GO:0003677
Ssu1g1820 701 ProSiteProfiles Response regulatory domain profile. 25 140 IPR001789 GO:0000160
Ssu1g1820 701 SUPERFAMILY Homeodomain-like 209 268 IPR009057 -
Ssu1g1820 701 SUPERFAMILY CheY-like 23 147 IPR011006 -
Ssu1g1820 701 SMART REC_2 24 136 IPR001789 GO:0000160
Ssu1g1820 701 CDD REC_typeB_ARR-like 26 140 - -
Ssu1g1820 701 MobiDBLite consensus disorder prediction 578 599 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1820 Ssu-Chr1 45595718 45600306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1820 18 444 Response Regulator Gene Family AT2G25180 51.270 7.68e-126 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Ssu1g1820 Response_reg 4.8e-26 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1820 K14491 - gmx:100776075 1239.94