Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1811 ATGATTGCGGACAAGAAACAGAATCTGATGAATTTTGTCCCGGCTCTTCGGTCTGGAGAGTGGTCTGATATTGGAAAACGCCCTTACATGGAGGATACCCACATATGCATTGGAGATTTGGCAAGGAAGTTTAATTATGATGAACTTTCTGAGGAAGCTGTTTCCTTTTATGGTGTATTTGATGGACATGAAGGAAAGAGTGCTGCACAATTTGTCCGTGATCGTCTGCCAAGAGTTATTGTTGAGGATGTTAACTTTCCTTTGGAGCTTGAGAAGGTGGTCAAAAGGTCATTTTTGGAGACTGATGctgcatttttaaaaacatcctCTCATGAACCTTCCCTTTCTTCTGGTACAACTGCATTAACTGCAATTATATTTGGAAGGTCTTTACTTGTAGCCAATGCTGGAGATTGCCGCGCTGTCTTGTCTCGCCATGGAAGGGCTATAGAAATGTCTAAAGATCATAGGCCAAGCTGTATCAATGAAAGGACGCGGGTTAAGTCCCTAGGTGGCTTCATTGATGATGGTTACCTGAATGGCAAGTTAGGTGTCACTCGCGCTCTTGGAGACTGGCACCTTGAAGGAATGAAGGAAATGAGTGAAAGAGGAGGACCACTGAGTGCTGAACCTGAACTTAAATTGATGACattgaccaaagaagatgaattcTTGATAATTGCTAGTGATGGAATATGGGATGTTTTTAGTAGCCAAAATGCTGTAGATTTTGCTAGAAGGAGGCTTCAAGAGCATAATGATGAGAAACTATGCTGCAAGGAAATAGTACAGGAAGGAATCAAGAGAGGATCAACAGATAACATGACAGTTGTGATGGTATGTTTTAACTTAGATCCTCCACCACCTGTGGTTGTGGAAAGAACACGAGTAAGAAGCATATCTGCAGAGGGACTTCAGAATCTTAGATGCCTGCTACAAGAATAA 945 0.4053 MIADKKQNLMNFVPALRSGEWSDIGKRPYMEDTHICIGDLARKFNYDELSEEAVSFYGVFDGHEGKSAAQFVRDRLPRVIVEDVNFPLELEKVVKRSFLETDAAFLKTSSHEPSLSSGTTALTAIIFGRSLLVANAGDCRAVLSRHGRAIEMSKDHRPSCINERTRVKSLGGFIDDGYLNGKLGVTRALGDWHLEGMKEMSERGGPLSAEPELKLMTLTKEDEFLIIASDGIWDVFSSQNAVDFARRRLQEHNDEKLCCKEIVQEGIKRGSTDNMTVVMVCFNLDPPPPVVVERTRVRSISAEGLQNLRCLLQE 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1811 314 SUPERFAMILY PP2C-like 10 283 IPR036457 -
Ssu1g1811 314 CDD PP2Cc 17 282 IPR001932 -
Ssu1g1811 314 PANTHER PROTEIN PHOSPHATASE 2C 27-RELATED 2 303 - -
Ssu1g1811 314 Pfam Protein phosphatase 2C 29 275 IPR001932 -
Ssu1g1811 314 PANTHER PROTEIN PHOSPHATASE 2C 2 303 IPR015655 GO:0004722|GO:0006470
Ssu1g1811 314 SMART PP2C_4 7 280 IPR001932 -
Ssu1g1811 314 ProSiteProfiles PPM-type phosphatase domain profile. 17 282 IPR001932 -
Ssu1g1811 314 Gene3D - 3 285 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1811 Ssu-Chr1 45333960 45336114 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1811 6 312 PP2C-type Phosphatase Gene Family AT2G25620 58.387 5.12e-127 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBP Ssu1g1811 PP2C 1e-68 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1811 K14803 - gmx:100813157 577.015