Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1810 ATGGTCATTTCAGCTTTTAAATCAAGGCCctgttctttttgttttcatacAGGAACCTACATTGACAAGAAGTGCCCCTTCACTGGCAATGTTTCCATCCGGGGTCGTATCCTAGCTGGTACTTGTCACAGTGCTAAGATGACAAGGACCATTATTGTTAGGAGGAATTATCttcattttattaagaaataccAGAGATATGAGAAGCGGCATTCAAATATTCCTGCACATGTATCACCTTGTTTCCGTGTGAAGGAAGGAGATCATGTAATTATTGGTCAATGCAGGCCACTCTCAAAGACAGTGAGGTTCAATGTGTTGAAAGTGATTCCAGCTGGATCCTCTAGCGGTGCAAAAAAGGCATTTACTGGAATATGA 378 0.3836 MVISAFKSRPCSFCFHTGTYIDKKCPFTGNVSIRGRILAGTCHSAKMTRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFTGI 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1810 125 PRINTS Ribosomal protein S17 family signature 97 104 IPR000266 GO:0003735|GO:0005840|GO:0006412
Ssu1g1810 125 PRINTS Ribosomal protein S17 family signature 54 77 IPR000266 GO:0003735|GO:0005840|GO:0006412
Ssu1g1810 125 PRINTS Ribosomal protein S17 family signature 87 97 IPR000266 GO:0003735|GO:0005840|GO:0006412
Ssu1g1810 125 PANTHER 40S RIBOSOMAL PROTEIN S11 FAMILY MEMBER 17 124 IPR000266 GO:0003735|GO:0005840|GO:0006412
Ssu1g1810 125 Pfam Ribosomal protein S17 40 108 IPR000266 GO:0003735|GO:0005840|GO:0006412
Ssu1g1810 125 Pfam Ribosomal_S17 N-terminal 17 38 IPR032440 -
Ssu1g1810 125 TIGRFAM uS17_arch: ribosomal protein uS17 22 109 IPR028333 -
Ssu1g1810 125 Gene3D - 13 125 - -
Ssu1g1810 125 ProSitePatterns Ribosomal protein S17 signature. 87 99 IPR019979 GO:0003735|GO:0005840|GO:0006412
Ssu1g1810 125 PANTHER BNAA06G38660D PROTEIN 17 124 - -
Ssu1g1810 125 SUPERFAMILY Nucleic acid-binding proteins 34 113 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1810 Ssu-Chr1 45317684 45318259 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1810 18 125 Cytoplasmic Ribosomal Protein Gene Family AT5G23740 90.741 5.06e-71 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1810 K02949 - gmx:100500186 221.476