Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1803 ATGGAGATTTTCAAATGCTTGTGCATCAATCTTCTTGTTACCTTCATGTTTTCAGCAGTTTTAGCAATCGACCTTTACTCAGAAGCACTCCTCAGCCTGAAATCTGAACTTGTAGATGATGATAACAGCTTGCATGACTGGGTGGTGCCCTCTGGAGGAAAATTAACTGGGAAATCCTATGCATGTTCTTGGTCAGGTATCAAGTGTAACAATGACTCAACAATTGTAACTTCCATAGACCTTTCCATGAAGAAACTGAAAGGTGTACTGTCAGGGAAGCAATTCAGCATCTTCACAAACCTTACTAATCTCAACCTGAGCTACAATTTCTTCTCTGGGCAGCTTCCGGCAGAGATTTTCAACCTCGCCAGCCTAACAAGCTTGGACATCAGCAGAAACAACTTTTCTGGTCCCTTCCCAAGGGCAATTCCCAGACTCCAAAATCTGGTTGTGCTTGATGCCTTCAGCAACAGCTTTTCAGGGCCATTGCCTGCTGAATTTTCACACCTAGCATATCTCAAGGTGCTCAATCTAGCTGGGAGCTACTTCAAAGGATCAATTCCATCTGAATATGGTTCTTTCAAAAGCCTTGAGTTTCTTCATCTTGCAGGAAATTCTCTTTCAGGACGCATACCTCCAGAACTGGGTAACCTCAAAACAGTGACCCACATGGAGATTGGCTACAACTTATACCAGGGTTTAATTCCACCCCAATTAGGTAACATGAGTCAGCTTCAGTATCTTGACATAGCAGGAGCAAACCTATCTGGCCCTATACCAAAGCAACTCTCCAACCTCACCAATTTGCAATCGCTTTTCCTGTTCAGAAACCAGCTCACAGGATCAATACCAAGCGAACTCAGCAACATCAACCCTCTCACAGATTTAGATCTCTCTGATAACTACCTTTCAGGGTCCATTCCCAACAGCTTCTCAGAGCTAGAGAACCTAAGACTGTTCAGTCTCATGTACAATGACATGAATGGCACTGTTCCTGAAGGCATTGCAGAACTTCCATCCTTGGAAACTCTTCTCATTTGGAACAACCACTTTTCTGGGTCACTTCCAGAGAGCTTAGGGAGGAACTCCAAACTCAAGTGGGTGGATGTTTCCACAAACAATTTAGTTGGTATCATTCCACCAGATATTTGTGTGAGTGGAGTACTATTTAAGCTAATCCTGTTTTCAAACAAATTCACAGGTGGTCTTTCATCAATCTCCAATTGCTCTTCCCTTGTTCGCCTTCGCCTAGAAGATAATTCATTCTATGGAGAAATCGCTTTGAAATTCAGCCACCTTCCTGATATCTTATACGTTGATCTGTCCAGGAACAACTTTGTTGGTGGGATTCCCTCAGATATTTCTCAAGCCACTCAACTGGAGTATTTCAATGTCTCTTATAATCCGCAATTAGGAGGCATCATCCCTGCACAAATGTGGTCTTTGCcccaacttcaaaattttacagCATCCTCTTGTGGTATTTCTGGTGATCTTCCCCGATTTGAGTCCTGTGAATCAATTTCAGTTATTGATCTAGATAGTAATAACTTATCTGGCACCATCCCGAAAAGTGTTTCCAAATGTCAAGCTCTAGAGAAAATCAAACTATCCAACAATAATTTGACAGGTCATATACCTGATGAGCTTGCCACTATTCCTGTTCTTGGTGTAGTGGACCTATCAAACAATAAGTTCAATGGCCCCATACCTGCAAAGTTTGGTAGTTCCTCAAGTTTACAACTTCTTAATGTGTCTTTCAACAATATCTCAGGTTCAATACCCACAGGAAAGTCATTCAAATTGATGGGTAGCAGTGCATTTGTTGGAAATTCAGAGCTATGTGGAGCACCCCTGCGACCATGTCCTGATTCAGTTGGAATATTGGGAAGCAAAGGCACGTGGAAGATCACACGTATTGTGCTACTCTGTGTAGGGTTGCTAATAGTCCTTCTGGGACTTGCTTTTGGAATATTTTATTTCAGAAGGGGAATTAAAAGTCAATGGAAGATGGTCTCATTCGCGGGTCTCCCTCAATTCACAGCAAATGATGTTTTGACAAGCCTCAGTGCCACAAAACCTACAGAAGTTCCATCACCATCACCTGCAGTTACAAAGGTTGTTCTGCCCACAGGAATAACAGTGTTGGTCAAGAAGATTGAATGGGAAGCGAGGAGCATGAAGGTTGTGTCAGAATTTATAACGAGACTGGGGAATGCAAGGCACAAGAATTTGATCAGACTGTTGGGGTTTTGCCACAACCAGCATCTAGTCTATCTCTTGTATGATTACTTGCCCAATGGGAATTTGGCtgagaaaattgaaatgaaatgggATTGGGCAGCTAAGTTCAGAACAGTGGTTGGAATTGCAAGGGGACTTTACTTCCTTCACCATGAATGTTCCCCAGCTATACCCCATGGAGACTTGAAGTCCAGCAACATTGTATTTGACGAAAATATGGAACCCCATTTGGCAGAATTTGGGTTCAAACAATTGTTGAAGTGGAGCAAAGGCTCGTCACCAACCTCAGCTAAGTGGGAAACAGAATACGATGAAGCCACCAAAGAGGAACTCTGCATGGATATTTACAAATTTGGGGAGATGATTCTGGAAATTCTAACTGGCGGAAGGTTGACAAATGCAGGAGCCACCATACACAACAAACCACCGGAAGTTCTCTCGAGAGAAATTTACAATGAGAATGAAGCAAGTTCTGCCAGTTCAATGCAAGAGATTAAAGTTGTTCTTGAGGTTGCTATGCTTTGCACCAGAAGCAGGTCATCCGATCGGCCATCCATTGAAGATGTTCTTAAGCTTCTGTCAGGGCTAAAGCATCTGGATGATGGCAGAACTTCAAAAGAAAggcaataa 2874 0.4207 MEIFKCLCINLLVTFMFSAVLAIDLYSEALLSLKSELVDDDNSLHDWVVPSGGKLTGKSYACSWSGIKCNNDSTIVTSIDLSMKKLKGVLSGKQFSIFTNLTNLNLSYNFFSGQLPAEIFNLASLTSLDISRNNFSGPFPRAIPRLQNLVVLDAFSNSFSGPLPAEFSHLAYLKVLNLAGSYFKGSIPSEYGSFKSLEFLHLAGNSLSGRIPPELGNLKTVTHMEIGYNLYQGLIPPQLGNMSQLQYLDIAGANLSGPIPKQLSNLTNLQSLFLFRNQLTGSIPSELSNINPLTDLDLSDNYLSGSIPNSFSELENLRLFSLMYNDMNGTVPEGIAELPSLETLLIWNNHFSGSLPESLGRNSKLKWVDVSTNNLVGIIPPDICVSGVLFKLILFSNKFTGGLSSISNCSSLVRLRLEDNSFYGEIALKFSHLPDILYVDLSRNNFVGGIPSDISQATQLEYFNVSYNPQLGGIIPAQMWSLPQLQNFTASSCGISGDLPRFESCESISVIDLDSNNLSGTIPKSVSKCQALEKIKLSNNNLTGHIPDELATIPVLGVVDLSNNKFNGPIPAKFGSSSSLQLLNVSFNNISGSIPTGKSFKLMGSSAFVGNSELCGAPLRPCPDSVGILGSKGTWKITRIVLLCVGLLIVLLGLAFGIFYFRRGIKSQWKMVSFAGLPQFTANDVLTSLSATKPTEVPSPSPAVTKVVLPTGITVLVKKIEWEARSMKVVSEFITRLGNARHKNLIRLLGFCHNQHLVYLLYDYLPNGNLAEKIEMKWDWAAKFRTVVGIARGLYFLHHECSPAIPHGDLKSSNIVFDENMEPHLAEFGFKQLLKWSKGSSPTSAKWETEYDEATKEELCMDIYKFGEMILEILTGGRLTNAGATIHNKPPEVLSREIYNENEASSASSMQEIKVVLEVAMLCTRSRSSDRPSIEDVLKLLSGLKHLDDGRTSKERQ 957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1803 957 SUPERFAMILY Protein kinase-like (PK-like) 704 941 IPR011009 -
Ssu1g1803 957 SMART LRR_typ_2 266 290 IPR003591 -
Ssu1g1803 957 SMART LRR_typ_2 194 218 IPR003591 -
Ssu1g1803 957 SMART LRR_typ_2 338 362 IPR003591 -
Ssu1g1803 957 SMART LRR_typ_2 98 122 IPR003591 -
Ssu1g1803 957 Pfam Leucine rich repeat N-terminal domain 28 70 IPR013210 -
Ssu1g1803 957 ProSitePatterns Serine/Threonine protein kinases active-site signature. 805 817 IPR008271 GO:0004672|GO:0006468
Ssu1g1803 957 SUPERFAMILY RNI-like 307 596 - -
Ssu1g1803 957 Gene3D Phosphorylase Kinase; domain 1 701 763 - -
Ssu1g1803 957 Gene3D Ribonuclease Inhibitor 387 503 IPR032675 -
Ssu1g1803 957 Gene3D Ribonuclease Inhibitor 147 220 IPR032675 -
Ssu1g1803 957 Gene3D Ribonuclease Inhibitor 25 146 IPR032675 -
Ssu1g1803 957 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE 3 946 - -
Ssu1g1803 957 Gene3D Ribonuclease Inhibitor 221 386 IPR032675 -
Ssu1g1803 957 PANTHER UNNAMED PRODUCT 3 946 - -
Ssu1g1803 957 Pfam Leucine Rich Repeat 293 314 IPR001611 GO:0005515
Ssu1g1803 957 Gene3D Transferase(Phosphotransferase) domain 1 764 956 - -
Ssu1g1803 957 SUPERFAMILY RNI-like 78 400 - -
Ssu1g1803 957 SMART serkin_6 680 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1803 957 Pfam Leucine rich repeat 508 566 IPR001611 GO:0005515
Ssu1g1803 957 Pfam Protein tyrosine and serine/threonine kinase 712 940 IPR001245 GO:0004672|GO:0006468
Ssu1g1803 957 ProSiteProfiles Protein kinase domain profile. 669 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu1g1803 957 Gene3D Ribonuclease Inhibitor 504 622 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1803 Ssu-Chr1 45144863 45148293 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1803 7 942 Receptor kinase-like Gene Family AT5G51350 54.219 0.0 960
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Ssu1g1803 PK_Tyr_Ser-Thr 6.1e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1803 - - aprc:113852384 1657.11