Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1800 ATGCTAAACCTCCTGAACTACCTCATACTATGCCTCTGGCCATTACCCGTGATAGTAATGGCGAGAGAGGTTTTGATACCAGTAGGGGTAGTTCTTGATTTGAACTCCCCGATTGGAAGCATGGCTAATAGCTGCATCTGGATGGCATATCATGATTTCTATAAACAGCATCCTCGTTTTCAAACCAGACTTGATCTTCGAACAAGAGACTCTGACCGTGATACAGTCACAGCAGCATATGCAGCCTCTGACTTAATAATGAAACAAAAGGTGAAGGCAATTACTGGACCTCAAACATCCGAACAAACAAGGTATGTAATAAACCTTGGGCGCGAATATTACGTCCCCATTATCTCCTTCTCCGCTACGAGTCCATCTCTTTCCCCAGCCCGCACTCCCATTTTCATACGAACGACACAAGATGATTCCTCTCAGGTCAAAGCCATAGCAGCCGTTGTGGAAGCATATGGTTGGCGCGAAGTCATCCTTATATATGAAAACACTGAATACGGCAACGGCCTCATCCCCCATCTCATAGATGCCTTGGACGCGGTTGACACCAAAGTACCTTACAGAAGCGTTATTGACCCCAATTCTGAAGAACCCCACATTTTGGAAGAGCTTAAAAGGCTCAAGAAAAAGTCAACAAGAGTATTTCTTGTTCACATGACTGGCGAACATGGATCTAAACTATTTCCGGCTGCAGAGAAAGTCGGAATGATGAGCGAAGGGTATGGATGGGTGGTCACTGAAGGGTTATCTGTTGAGTTAGATCCTTCAGCTCCAGAAAGAATGGACAGCATGCAAGGTGTCTTGGGAGTGAGGCCAAAAGTGAGCAACACTGAGAGGCTCGAGGACTTGAAGAAAAGATGGAAAGCTTTGTCCCTTAAGGAAAACATGAAGTTTGATACTCATACCATGACATTGTTCGGGTTGTGGGCTTATGATACAGTGTGGGCATTAGCCATGGCAGTAGAGAATGCAACCAATGAGAATCAGAGTGATTCCCTTGTAAGCACAATCCTGGCTACGAAATTCCCTGGCCTATCTGGGTATTTCGATTTGAAAGGAGGACAATTAGAGCCGTCAGTGGTTGAAGTGTTCAATGTGATAGGTCATAAAGAGAGGGTTATTGGATACTGGAGCCCCGAAAGAGGACTATTTCGAGATGACCAATCAAATGTTTCCCAAGACAAACAGAGACTGAGGCAACCGGTCTGGCCAGGTTACACAACGGATCAGCCACCCAAGTTGAGATTTATGGTCGCGGTGAGAAAGGGTTTCACTGAGTTTGTAAAAGTGGAAAGCGTATTTCCCTCTAAAGCTACAACAATTTCCGGGTTCGTTGTTGATGTGTTTTTAGAGGCGTTGAACGCATTGCCTTTCCCCGTATCGTACGAATTCGTCCCCATGGAAGACTATGGCGCCCTTGCTTGGCATCTGCTAAACCATTATTCCTGTGATGCTGCAGTTGGAGACTTCACAATAGTTTATAATCGCACAAATTATGTCGATTTCACACTGCCTTACTTAGAATCTGGGTTGTCAATGGTGGTTTCAATGAAGCATGATCAGAGACGAAACATGTGGATATTCTTGAAACCTCTAAGTTGGGGTCTTTGGTTGACTACTGGTGCAGCCTTGTTCCTCACTGGCTTCGTCGTGTGGTTTCTGGAGCACCGTTCAAACGCAGCATTTAGAGGAACCCCGGACCAGCAACTTGGCATTGTTTTCTGGTTTTCCTTTTCAACACTTGTCTTTGCTCACAGGGAGAGATTAGTGAGTAACTGGTCGAGATTTGTGCTGATTGTATGGGTATTTGCAGTGCTCATCATCACCCAAAGTTACACTGCGAGTTTAGCTTCGATGCTAACAATAGAAAGCCTCCGACCAGAATTCATTGacatgaaagagataaaaaggaaTAATTACTTTGTGGGATATCAGAACCACTCCTTCGCGAAAACGATTTTAACAAATCAATTAGGACTCAGTGAGTCCCAGTTAAAGGCTTACAATACTCCTGAAGAGTATCATGAAGCACTTTCAAAAGGGACCAACAACGGCGGGGTAGCGGCTATCATTGATGAAAGTCCCTACATCAacgtttttctctcaaaatatgaCACTGGGTATGCTATGGTCGGACCGTTTTATAAAACAAACGGATTAGCCTTTGCATTTCCTCTAAAATCACCTCTAGTGTCATATTTTTCGAGGGCAATCCTAAATGTCATCGAAGATAAAGACAAGTTTGAAGGGATTAAGAACAAGTATTTCTCAACAAGAATTGTCTCTAAAGATCAAAGTGCCTCAAATTTAGACAGTCAAAGTCTTACAGTGAGTAGCTTTGCAGGCCTTTTCATCGTCACAATGATTGCTTCATTCCTATCATTCTCCTTTTATGTGTTTAGTTTGCTATACTCCCAATGGTCTACTCTGAGAAGCATTCATTCTGAACAAACATCCTTTTGGTCATTTTGGTGGTTCAAATTGTATAGCATTTTGATCGAAAAGATGGTCCTTAATTTACAACCTACAATGGATAGAAATCAATCTAAAGTACAACCAACAAGAAGTCTGGAGAGAAACGGAGCCTCCTGCACTATTGATGGCATAGACAACCACTCAAAGACAAATTATAATCACAATGATAAAGCTAATGTTGTTCTTTTAAATGAAGACTGTTAA 2691 0.4233 MLNLLNYLILCLWPLPVIVMAREVLIPVGVVLDLNSPIGSMANSCIWMAYHDFYKQHPRFQTRLDLRTRDSDRDTVTAAYAASDLIMKQKVKAITGPQTSEQTRYVINLGREYYVPIISFSATSPSLSPARTPIFIRTTQDDSSQVKAIAAVVEAYGWREVILIYENTEYGNGLIPHLIDALDAVDTKVPYRSVIDPNSEEPHILEELKRLKKKSTRVFLVHMTGEHGSKLFPAAEKVGMMSEGYGWVVTEGLSVELDPSAPERMDSMQGVLGVRPKVSNTERLEDLKKRWKALSLKENMKFDTHTMTLFGLWAYDTVWALAMAVENATNENQSDSLVSTILATKFPGLSGYFDLKGGQLEPSVVEVFNVIGHKERVIGYWSPERGLFRDDQSNVSQDKQRLRQPVWPGYTTDQPPKLRFMVAVRKGFTEFVKVESVFPSKATTISGFVVDVFLEALNALPFPVSYEFVPMEDYGALAWHLLNHYSCDAAVGDFTIVYNRTNYVDFTLPYLESGLSMVVSMKHDQRRNMWIFLKPLSWGLWLTTGAALFLTGFVVWFLEHRSNAAFRGTPDQQLGIVFWFSFSTLVFAHRERLVSNWSRFVLIVWVFAVLIITQSYTASLASMLTIESLRPEFIDMKEIKRNNYFVGYQNHSFAKTILTNQLGLSESQLKAYNTPEEYHEALSKGTNNGGVAAIIDESPYINVFLSKYDTGYAMVGPFYKTNGLAFAFPLKSPLVSYFSRAILNVIEDKDKFEGIKNKYFSTRIVSKDQSASNLDSQSLTVSSFAGLFIVTMIASFLSFSFYVFSLLYSQWSTLRSIHSEQTSFWSFWWFKLYSILIEKMVLNLQPTMDRNQSKVQPTRSLERNGASCTIDGIDNHSKTNYNHNDKANVVLLNEDC 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1800 896 Gene3D - 52 147 - -
Ssu1g1800 896 SUPERFAMILY Periplasmic binding protein-like I 26 382 IPR028082 -
Ssu1g1800 896 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 26 808 - -
Ssu1g1800 896 Gene3D - 414 528 - -
Ssu1g1800 896 CDD GluR_Plant 417 760 - -
Ssu1g1800 896 Gene3D - 148 309 - -
Ssu1g1800 896 CDD PBP1_GABAb_receptor_plant 28 389 IPR044440 -
Ssu1g1800 896 Pfam Receptor family ligand binding region 48 371 IPR001828 -
Ssu1g1800 896 Gene3D - 529 663 - -
Ssu1g1800 896 SMART GluR_14 417 762 IPR001320 GO:0015276|GO:0016020
Ssu1g1800 896 SUPERFAMILY Periplasmic binding protein-like II 429 761 - -
Ssu1g1800 896 PANTHER GLUTAMATE RECEPTOR 26 808 - -
Ssu1g1800 896 Pfam Bacterial extracellular solute-binding proteins, family 3 442 761 IPR001638 -
Ssu1g1800 896 PIRSF IGluLR_plant 1 886 IPR017103 -
Ssu1g1800 896 Pfam Ligand-gated ion channel 762 794 IPR001320 GO:0015276|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1800 Ssu-Chr1 44958263 44984799 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1800 4 825 Ion Channels AT2G29110 41.667 0.0 607
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1800 K05387 - gmx:100799966 1276.54