Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1799 ATGAAGGAGCTCAATAAACTGAAGTTAATGGCAACAAAAGTGTTTCTTGTTCACATGGGCAGTGAACTTGGGTGTAAGTTGTTTCTAGCTGCAAAGAAAGCAGGGATGATGACAATGGGATACGCATGGATAGTTACTGAAGGCCTATCTGCAGAGGTAGACCCTATGGTGTTAAAATGCATGGATTCCATGCAAGGTGTGTTGGGAGTTAGGCCTAGCCCAAACCACTCCAATAGGCTTGAACACttcaaagaaagatggaagGGGTTAGCAGGTAAAGGAAACAATAAGTCCAATGTGGTAAGTGTAACCATCTTTGGATTGTGGGCCTATGACACTGTTTGGGCATTAGCCAAGGCAGTGGAGAACGTTTGGAGGGAAAGCTCTCCCTCCCAAAAGCAAAACGTTACTACCCTTCTTAACACAATCCTGGCTACCAAATTCCATGGCCTCTCTGGGAATTTCCATTTGGTTAAAGGACAACTAGAGCCATCAACTCTTGAAGTGTTCAATGTTGTGGAAAAAGCAGAGAGGAGTATTGGAAATTGGATGCCAGAGAGAGGGCTTTCTAAATTAAAGCCACCGAAATGGCCAGGTAACACAACAGAGCCTCCAGCAAAGTTGAGGATTGGGATACCAGCTGCAAACAGTGTCAATGAATTCAAGAAAGTTCTGAACTTCTCTTTTGATGTGTTTTCTGAAGCCTTGAAGGTTTTACCCTTTTCCCTGCATTATGAATTCTTCCCTTACAAGAAACATGGGGAGACCGCTGGTACCTATGATGAActtattatgcaaattaagGAAAAGAGGTATGATGCTGTGGTTGGGGACGTGACAATTGTGGCCAACCGCTCAAAGTATGTTGattttacaatgtcattttCAGAATCAGGCGTGGCAATGTTGGTTTTGGCGAAGCATGATGAGAGACAAAACATTTGGATTTTCCTGAAGCCATTTAGTTGGGACCTTTGGTTGACAACTGGTGCAGCCTTCGTCTTCACAGGTTTCATCGTTTGGTTTATTGAACACCGCTCTAACTCAGAGTTCAGGGGCACTCCAACGAACCAACTCGGCATGGTTCTCtggttttctttttcaacactCGTCTTTGCTCATAGGGAGAGGGTAGTGAACAATTGGTCACGATTTGTGCTGATTATATGGTTCTTTGTGGTACTCATCATAACGCAAAGTTACACTGCAAGTTTAGCTTCTATTCTGACGGTACAGAAACTGCAGCCTGTGTTTATGGACGCAGAAGAgatcaaaagaaataattactttgtCGGATATCATCAGGGTTCCTTTGTGAGAGGACTACTAACAGAAAAGTTGGGATTCAACGAATCTAAGTTAAAGGGTTACGACGGCCCTGAGGCCTATAAACAAGCTCTGTCCCTGGGAAGCAATAATGGAGGAGTCGCTGctatttttgatgaaattatctttattaacatCTTCCTCGTGAAATATGGCTTTAAAAAGTATCAGATGGTTGGACCAACATACAAAACCGATGGTTTTGCCTTCGCATTCCCACGAAACTCTCCATTTGTCCCTTACTTTTCGAGGGCAATCGTAAACGTCactgaaaataaaacaacatttgATGGGATTAAGAAGAAGTACTTCTCGAGCGACGTGATGAGTGAAGATGCAAGCACCTCAATGGCATTTGGAAGCCCAAACTTAACTTTAAAGAGCTTTGGGGGGCTTTTCATCATCACATTGTTCACTTCATTGTTCGCACTCACGGTCCATTTGTTTAAGTTCATACATCCAAAATGGACTGCTCGGGACTTTCAGATATCCCTTTCCGAGATGATGACTGAATTGGCAAAGCATTTCAACAAAGGAGAAAGCTCTTTTCATCCTCCTCCAAATAGTCCGGAAATGGAGGAAGGTGATCAATCAATAATTCACAACGAGGAAGATCTAAGACAGCTATTTGAAGACAAAgatcgataa 1974 0.4048 MKELNKLKLMATKVFLVHMGSELGCKLFLAAKKAGMMTMGYAWIVTEGLSAEVDPMVLKCMDSMQGVLGVRPSPNHSNRLEHFKERWKGLAGKGNNKSNVVSVTIFGLWAYDTVWALAKAVENVWRESSPSQKQNVTTLLNTILATKFHGLSGNFHLVKGQLEPSTLEVFNVVEKAERSIGNWMPERGLSKLKPPKWPGNTTEPPAKLRIGIPAANSVNEFKKVLNFSFDVFSEALKVLPFSLHYEFFPYKKHGETAGTYDELIMQIKEKRYDAVVGDVTIVANRSKYVDFTMSFSESGVAMLVLAKHDERQNIWIFLKPFSWDLWLTTGAAFVFTGFIVWFIEHRSNSEFRGTPTNQLGMVLWFSFSTLVFAHRERVVNNWSRFVLIIWFFVVLIITQSYTASLASILTVQKLQPVFMDAEEIKRNNYFVGYHQGSFVRGLLTEKLGFNESKLKGYDGPEAYKQALSLGSNNGGVAAIFDEIIFINIFLVKYGFKKYQMVGPTYKTDGFAFAFPRNSPFVPYFSRAIVNVTENKTTFDGIKKKYFSSDVMSEDASTSMAFGSPNLTLKSFGGLFIITLFTSLFALTVHLFKFIHPKWTARDFQISLSEMMTELAKHFNKGESSFHPPPNSPEMEEGDQSIIHNEEDLRQLFEDKDR 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1799 657 Pfam Bacterial extracellular solute-binding proteins, family 3 257 547 IPR001638 -
Ssu1g1799 657 CDD GluR_Plant 207 546 - -
Ssu1g1799 657 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 1 595 - -
Ssu1g1799 657 SUPERFAMILY Periplasmic binding protein-like II 207 549 - -
Ssu1g1799 657 SMART GluR_14 209 548 IPR001320 GO:0015276|GO:0016020
Ssu1g1799 657 MobiDBLite consensus disorder prediction 620 643 - -
Ssu1g1799 657 SUPERFAMILY Periplasmic binding protein-like I 2 184 IPR028082 -
Ssu1g1799 657 Pfam Receptor family ligand binding region 4 173 IPR001828 -
Ssu1g1799 657 Pfam Ligand-gated ion channel 548 580 IPR001320 GO:0015276|GO:0016020
Ssu1g1799 657 Gene3D - 72 164 - -
Ssu1g1799 657 Gene3D - 4 189 - -
Ssu1g1799 657 Gene3D - 315 440 - -
Ssu1g1799 657 PANTHER GLUTAMATE RECEPTOR 1 595 - -
Ssu1g1799 657 Gene3D - 201 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1799 Ssu-Chr1 44948805 44951495 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1799 2 631 Ion Channels AT2G29100 40.237 3.16e-140 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1799 K05387 - gmx:100800495 1057.36