Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1787 ATGGCTTTCCACGAGCATCTACCGCACGAAATCACGTTTCAGCCGTTCGCGGAGGAGCAGCAGTTGGGTCAGGGCAGGGACATGCAGCGGCTGCTGCCACTCTCCGGCGGGGCGCCGACGTGGCTGAACGGAAGCAGCGCGGCGGCGACGACGACGCTCCGGCAGCAGAATTTCCTCCACCTGCAACCGGACTCGGCGGCGGCGCAGCGGAACGACGACGTTCGGAGGGGCGCGATGGGGTCGGAGAAGAGCGTGGATCGGAACCGGACGGAGGGAAACTCGGAACCGGACGATTTGGCGGAATACAAAGCGGACATTTTGGGACACCCGCTCTACGATCAGCTCCTATCGGCTCACGTCTCGTGCTTGAGGATCGCCACGCCCGTTGACCAGCTTCCAAGGATCGACGCGCAGCTTCAGCAGTCGCAGCGCGTCGTTGATAAGTACTCTGGCCTTGGAAATGGGGTCTTCGATCACAAGGAGCTTGATCAATTCATGacgCATTATGTTATACTGCTCTGTGCTTTCAAAGAACAATTGCAACAACACGTCCGTGTTCATGCCATGGAAGCTGTTATGGCTTGTTGGGAGCTCGAGCAATCTCTACAAAGCTTGACTGGTGTATCTCCCGGTGAAGGAACGGGTGCAACAATGTCCGAGGATGAAGAAGACCAGGCAGAGAGTAATGCCAACATATACGAAGGAGGCATGGATGGCGCTGATAGTCTCAGCTTTGGTCCTCTTGTTCCCACTGAGACCGAAAGATCTTTGATGGAGCGTGTGAGGCAGGAGTTGAAGCATGAGTTAAAACAGGGTTACAAGGACAAGATTGTGGACATAAGAGAAGAAATTCTACGAAAGAGAAGAGCGGGGAAGCTCCCAGGTGACACCACTTCCCTTTTAAAAGCTTGGTGGCAGTCACATTCTAAATGGCCATATCCAACAGATAAGGTTATTGTCCCAATGTACGTAGCTAGGGATTGA 984 0.5407 MAFHEHLPHEITFQPFAEEQQLGQGRDMQRLLPLSGGAPTWLNGSSAAATTTLRQQNFLHLQPDSAAAQRNDDVRRGAMGSEKSVDRNRTEGNSEPDDLAEYKADILGHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVDKYSGLGNGVFDHKELDQFMTHYVILLCAFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSEDEEDQAESNANIYEGGMDGADSLSFGPLVPTETERSLMERVRQELKHELKQGYKDKIVDIREEILRKRRAGKLPGDTTSLLKAWWQSHSKWPYPTDKVIVPMYVARD 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1787 327 ProSiteProfiles ELK domain profile. 264 284 IPR005539 GO:0003677
Ssu1g1787 327 PANTHER CLASS II KNOTTED-LIKE HOMEOBOX PROTEIN 22 316 - -
Ssu1g1787 327 SMART ELK_2 264 285 IPR005539 GO:0003677
Ssu1g1787 327 SMART KNOX2_2 151 207 IPR005541 GO:0003677|GO:0005634
Ssu1g1787 327 Pfam ELK domain 264 285 IPR005539 GO:0003677
Ssu1g1787 327 MobiDBLite consensus disorder prediction 206 227 - -
Ssu1g1787 327 Pfam KNOX1 domain 102 143 IPR005540 GO:0003677|GO:0005634
Ssu1g1787 327 MobiDBLite consensus disorder prediction 63 97 - -
Ssu1g1787 327 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 22 316 - -
Ssu1g1787 327 Gene3D - 253 320 - -
Ssu1g1787 327 Pfam KNOX2 domain 158 206 IPR005541 GO:0003677|GO:0005634
Ssu1g1787 327 MobiDBLite consensus disorder prediction 69 97 - -
Ssu1g1787 327 SMART KNOX1_2 100 144 IPR005540 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1787 Ssu-Chr1 44652620 44658288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1787 72 317 Homeobox Transcription Factor Family AT5G25220 72.941 8.11e-131 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1787 - - gmx:100816347 571.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0919 6 14878602 14887791 Ssu1g1787 1 44652620 44658288 PCT